Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 316 / 1e-99 Protein kinase superfamily protein (.1.2) AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1) AT5G38280 299 / 1e-92 PR5K PR5-like receptor kinase (.1) AT1G66930 297 / 9e-92 Protein kinase superfamily protein (.1) AT1G66910 296 / 1e-91 Protein kinase superfamily protein (.1) AT1G66980 302 / 3e-90 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT4G18250 291 / 4e-88 receptor serine/threonine kinase, putative (.1) AT5G39020 289 / 2e-87 Malectin/receptor-like protein kinase family protein (.1) AT5G39030 289 / 2e-87 Protein kinase superfamily protein (.1) AT5G38240 283 / 3e-87 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G118300 [exp] 973 / 0 AT1G66920 316 / 1e-99 Protein kinase superfamily protein (.1.2) Potri.015G018600 [exp] 467 / 1e-157 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G007900 [exp] 421 / 2e-139 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 411 / 1e-135 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 404 / 4e-133 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 402 / 3e-132 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.015G018200 [exp] 385 / 2e-126 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.017G034500 [exp] 371 / 1e-124 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 371 / 3e-124 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007934 [exp] 498 / 3e-170 AT5G38260 273 / 3e-83 Protein kinase superfamily protein (.1) Lus10014924 [exp] 417 / 4e-138 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025492 [exp] 393 / 9e-129 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10022359 [exp] 383 / 9e-126 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10014923 [exp] 338 / 4e-108 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10008335 [exp] 339 / 3e-107 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10008362 [exp] 332 / 8e-107 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025545 [exp] 325 / 2e-106 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10026761 [exp] 311 / 1e-98 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10025547 [exp] 312 / 2e-98 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.008G125500.1 pacid=42805793 polypeptide=Potri.008G125500.1.p locus=Potri.008G125500 ID=Potri.008G125500.1.v4.1 annot-version=v4.1 ATGACAAAAAGGCAAGGTTCACCTACAGCCTCAGCCACTCTGTTTACTCTGCTAATCTTTCTACTCACAACCAAAGTTCTTGCAAGATTCATCCCACATG TTTGCTCCCCTTCCTCATGTGGAGAAATTGAAATCGACTACCCTTTTCGCCTGAAGACCGATCCTGCTGGCTGTGGCGAACCAGACTTCGAACTTTCTTG CGAGAACAACAAGACCATATTAGAACTCCACTCAGGGAAGTATCTTGTTAAGCGAATTTCCTATGATGTTCAGAGACTCCGTGTCGTTGATGTTAACTTA GCTAATGGTACCTGCAGCCTCCCGTACAAATCAGTGTCGGTTGATGAGTTTATGGATGATGATCACTACATATTAGACGCTACTACTTATACAAGTTTTA TCAAGTGTTCGAGTAATTTGAGTGACCAAGCTTATAGACTAGTTCCTTGTTTGAGTGGAAATGGGACTAGTGTTTATGTTAGTTATGTCACCTACATAAT TTCTAGTCTCCAAGGATCTTGCTTGTTCGTTTCAAGAGTGCCTACGGTTTATCAGGCTGTGCTGTTCCCCTCTTATGATAGTATCTTGCAATTGATGCAA ACAGGGTTTGATCTTGAATGGTCTGTTGGGTGCTGGTACTCATCATATAGCTATGATTGTTACAGATCAGATTATTATCTTCCCCTATGGTTTGCAGCCT TCTCTGTGGTTTGGGATTTTTTGTCAGCAGTATATCTTGTTGGAAGATTCATCCTCGCTCCGATAGGGATATTTGGATTCCTCATTCACAAGTATATGAC AACAAAGAAGGCGTCTGGCAACGAAGAGATATTTCTGGTCAATCAGCAACACTTGATGCCCAAGAGGTACACTTTCTCTGACATTATTGCAATTACAAAC AACTTCAAAGATAAATTAGGCCAAGGTGGATTTGGGAATGTATATAAAGGACAACTTCGTGATGCGTTTTTAGTTGCCGTTAAAATGCTTGGCAATGCCA AATGCAATGACGAGGACTTCATTAATGAAGTCTCCATAATTGGTAGAATTCATCATGTTAACATAGTACGGCTGGTGGGATTTTGTTCCGAGGGATCTTA CCGAGCTCTTGTATTCGAGTATATGGCTAATGGATCTCTTGATAAGCTTTTATTTTCAAGAGAAACAGAACTTCTTCTAGTTAGTTGGGAGAAACTCCTT CAGATAGCTGTAGGCACAGCTCGAGGGATTGAGCATCTTCATGGGGGATGCAGCGTATGCATTCTTCATTTGGATATTAAGCCTCACAATGTCCTGCTAG ATAGTAATTTCATCCCAAAAGTTTCAGATTTTGGCCTTGCAAAATTTTATCCCAGGGAAAAGGATTTTGTATCCATTAGTACTACCAGAGGAACTATAGG GTACTTTGCTCCTGAAATGATTTCAAGGAACCTCGGAGCTGTTTCTTGCAAATCAGATGTTTATAGTTTTGGGATGTTATTGTTGGAAATGGCTGGAAGA AGAAGGAAGTCTAATTCAAAGGGAAATTGCTCAAGCGATGTATATTTCCCATCGTGGGTTTATGACCATCTCAGTGAGGGAGGAGATTTAGAGCTTGAGA ATGTCACTGAAATTGAGGCTGCAATAGCAAGAAAGCTGTGTATCGTTGGGCTGTGGTGCATCCAAAAGGCAGCATCAGATCGTCCAACCATGACCAAAGT GGTGGAAATGCTTGGAGCAAACATCGATGATCTGCAATTGCCTTCCAATGCTCTATCATTTCCCCAATCTATTTCCAAGGAACCTCAATCAGATTCCTCA ACGGAATCGCTAATACCCGAGACAGCGGATCGAAGTTTGTAG
AA sequence Show only first row Show all	>Potri.008G125500.1 pacid=42805793 polypeptide=Potri.008G125500.1.p locus=Potri.008G125500 ID=Potri.008G125500.1.v4.1 annot-version=v4.1 MTKRQGSPTASATLFTLLIFLLTTKVLARFIPHVCSPSSCGEIEIDYPFRLKTDPAGCGEPDFELSCENNKTILELHSGKYLVKRISYDVQRLRVVDVNL ANGTCSLPYKSVSVDEFMDDDHYILDATTYTSFIKCSSNLSDQAYRLVPCLSGNGTSVYVSYVTYIISSLQGSCLFVSRVPTVYQAVLFPSYDSILQLMQ TGFDLEWSVGCWYSSYSYDCYRSDYYLPLWFAAFSVVWDFLSAVYLVGRFILAPIGIFGFLIHKYMTTKKASGNEEIFLVNQQHLMPKRYTFSDIIAITN NFKDKLGQGGFGNVYKGQLRDAFLVAVKMLGNAKCNDEDFINEVSIIGRIHHVNIVRLVGFCSEGSYRALVFEYMANGSLDKLLFSRETELLLVSWEKLL QIAVGTARGIEHLHGGCSVCILHLDIKPHNVLLDSNFIPKVSDFGLAKFYPREKDFVSISTTRGTIGYFAPEMISRNLGAVSCKSDVYSFGMLLLEMAGR RRKSNSKGNCSSDVYFPSWVYDHLSEGGDLELENVTEIEAAIARKLCIVGLWCIQKAASDRPTMTKVVEMLGANIDDLQLPSNALSFPQSISKEPQSDSS TESLIPETADRSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	0	1
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	1.41	0.8514
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	2.82	0.8363
AT1G70250			receptor serine/threonine kina...		Potri.003G113900 [exp]	3.74	0.7651
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	8.36	0.7802	Pt-CNGC.2
AT3G14470			NB-ARC domain-containing disea...		Potri.014G012000 [exp]	8.48	0.7933
AT3G17940			Galactose mutarotase-like supe...		Potri.017G129300 [exp]	9.48	0.7913
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.008G151300 [exp]	9.64	0.7413
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	10.39	0.7717
AT3G60470			Plant protein of unknown funct...		Potri.014G053700 [exp]	11.31	0.7733
AT2G44930			Plant protein of unknown funct...		Potri.014G053900 [exp]	12.84	0.7707

Compare expression of checked genes

Potri.008G125500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.