Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79620 444 / 2e-147 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 296 / 3e-91 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 265 / 9e-84 Leucine-rich repeat (LRR) family protein (.1) AT5G49770 275 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 180 / 2e-49 Leucine-rich repeat protein kinase family protein (.1) AT3G12145 119 / 2e-30 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT1G06840 119 / 1e-28 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 115 / 2e-27 Leucine-rich repeat protein kinase family protein (.1) AT5G06860 109 / 1e-26 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 (.1) AT1G17750 107 / 1e-24 AtPEPR2 PEP1 receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G144100 [exp] 528 / 8e-180 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 505 / 5e-171 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 320 / 2e-100 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 314 / 7e-98 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 306 / 2e-95 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 303 / 6e-94 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 271 / 5e-82 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231551 [exp] 257 / 8e-82 AT1G79620 324 / 4e-102 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 270 / 1e-81 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023849 [exp] 415 / 5e-141 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 286 / 8e-88 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 278 / 3e-84 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019036 [exp] 117 / 8e-28 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 115 / 2e-27 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019114 [exp] 113 / 1e-26 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029622 [exp] 109 / 4e-26 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10034445 [exp] 105 / 4e-24 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037108 [exp] 101 / 9e-24 AT5G61240 550 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10031337 [exp] 103 / 1e-23 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G125600.1 pacid=42807904 polypeptide=Potri.008G125601.1.p locus=Potri.008G125600 ID=Potri.008G125600.1.v4.1 annot-version=v4.1 ATGGGATTTAGAGCCACAGCCCAGTTGCTCTTCCTCCTTTCTTTCTTTGCTTCTGGAATTCATCTCAATCTCTCTGCCACAGACCCTGGTGATGCGGCAG AACTCCAATCCCTCAAGAGTCATTGGCAAAATACACCACCAAGCTGGGATCAGACCGAAGATCCATGCGGAGCACCATGGGTAGGAGTTACATGCAACAA TTCAAGGATCACTTCATTGAAGTTACCATGCATGAGCCTCGCAGGGAATCTAAGTGATCGTATTGGAGGACTAACCGAATTGAGATCCTTGGACCTGTCA TTTAATCCAAACGTTACAGGATCCCTCACTCCACGGTTAGGAGATCTGAAAAACTTGAAAATCCTAATTCTTGCTGGCTGTGGCTTCAGTGGTAGTATTC CAGATGAGCTGGGCAATCTTGCTGAGCTATCCTTCTTGGCTCTCAACTCAAACATTTTATCTGGTAGAATCCCCGCTTCGCTCGGTAAACTCTCCAAACT CTACTGGCTGGACCTTGCAGAAAATCAATTGACAGGAACAATCCCAATCTCCAAGAACTCCAGCCCAGGCTTGGACCAGCTACTAAATGCTAAGCACTTC CATTTCAATAGAAACCAGCTTTCAGGCTTCATTCCACCTGAACTTTTCAGCTCTGATATGATGCTGATACACGTATTGTTCGATGGGAATCGACTTGAAG GAGAAATTCCTTCCACATTAGGTCTAGTTCAGACTCGAGGTTCTGTAAGTGAAAACTGCCCCGGTTTTGTCTTCCTCGTTGCGAGCTCAATTAGGACTGA TATAATTCATTTTGTTTGCCGCAGTCGACTCAATAGAAATGCTTTATCTGGGGAGGTTCTAAAAAATCTGAACAACCTCACGAATCTCAATGAATTGAAT TTAGCAAACAATAAACTTACGGGCCCTTTACCAGATTTAACTAAAATGGACTCCCTCAGATACGTGGATCTCAGTAACAATTCCTTCGACTCTTCAGAAT CTTCTGATTGGTTCTCAACCTTACCATCTCTCACCACCTTAGTTATAGAAAATGGACCTCTTCAAGGGACTTTAACGTCAAAAGTCTTCAGCTTTCCCTA TATACAGCAAGTGCTATTGAGGAACAATGCATTCAATGGCACCTTTGACCTGGATGACAGCTTTAGTCCACAACTTCAACTCGTTGATCTGCAGAACAAC CAGATTTCCGCCGTAACACTGTCAGCTGACTACAAAAACAAACTAATACTTGTGGGAAACCCTGTGTGCACTGGTCTCCCAAATGTTAGTTTCTGTCAAC CGTAG
AA sequence Show only first row Show all	>Potri.008G125600.1 pacid=42807904 polypeptide=Potri.008G125601.1.p locus=Potri.008G125600 ID=Potri.008G125600.1.v4.1 annot-version=v4.1 MGFRATAQLLFLLSFFASGIHLNLSATDPGDAAELQSLKSHWQNTPPSWDQTEDPCGAPWVGVTCNNSRITSLKLPCMSLAGNLSDRIGGLTELRSLDLS FNPNVTGSLTPRLGDLKNLKILILAGCGFSGSIPDELGNLAELSFLALNSNILSGRIPASLGKLSKLYWLDLAENQLTGTIPISKNSSPGLDQLLNAKHF HFNRNQLSGFIPPELFSSDMMLIHVLFDGNRLEGEIPSTLGLVQTRGSVSENCPGFVFLVASSIRTDIIHFVCRSRLNRNALSGEVLKNLNNLTNLNELN LANNKLTGPLPDLTKMDSLRYVDLSNNSFDSSESSDWFSTLPSLTTLVIENGPLQGTLTSKVFSFPYIQQVLLRNNAFNGTFDLDDSFSPQLQLVDLQNN QISAVTLSADYKNKLILVGNPVCTGLPNVSFCQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79620			Leucine-rich repeat protein ki...		Potri.008G125600 [exp]	0	1
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	6.40	0.9813
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	10.67	0.9804
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118500 [exp]	14.07	0.9804
AT3G08680			Leucine-rich repeat protein ki...		Potri.003G138900 [exp]	15.49	0.9799
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	17.88	0.9801
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075100 [exp]	19.97	0.9798
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	20.19	0.9770
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	20.49	0.9763
AT1G18970		GLP4	germin-like protein 4 (.1)		Potri.013G116500 [exp]	20.97	0.8615
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G143600 [exp]	20.97	0.9795

Compare expression of checked genes

Potri.008G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.