Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RHA2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01150 123 / 3e-36 RHA2B RING-H2 finger protein 2B (.1) AT1G15100 115 / 3e-33 RHA2A RING-H2 finger A2A (.1) AT2G04240 59 / 2e-11 XERICO RING/U-box superfamily protein (.1.2) AT3G61460 56 / 3e-10 BRH1 brassinosteroid-responsive RING-H2 (.1) AT4G30370 56 / 4e-10 RING/U-box superfamily protein (.1) AT2G42360 55 / 2e-09 RING/U-box superfamily protein (.1) AT5G41400 54 / 2e-09 RING/U-box superfamily protein (.1) AT5G20885 53 / 5e-09 RING/U-box superfamily protein (.1) AT3G61180 54 / 7e-09 RING/U-box superfamily protein (.1) AT5G45290 54 / 7e-09 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G118000 [exp] 226 / 9e-77 AT1G15100 142 / 7e-44 RING-H2 finger A2A (.1) Potri.007G086300 [exp] 62 / 2e-12 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.005G081200 [exp] 61 / 6e-12 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.014G170400 [exp] 60 / 7e-12 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.010G047100 [exp] 59 / 1e-11 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.005G081300 [exp] 59 / 3e-11 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086100 [exp] 59 / 3e-11 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 59 / 4e-11 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.006G144200 [exp] 58 / 1e-10 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013475 [exp] 84 / 8e-21 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10007936 [exp] 83 / 1e-20 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10007937 [exp] 74 / 5e-17 AT1G15100 100 / 2e-27 RING-H2 finger A2A (.1) Lus10027736 [exp] 60 / 1e-11 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10017510 [exp] 56 / 5e-10 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10019150 [exp] 55 / 6e-10 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10008283 [exp] 55 / 2e-09 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10029456 [exp] 53 / 2e-09 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10028773 [exp] 54 / 3e-09 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10003617 [exp] 53 / 7e-09 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.008G125700.1 pacid=42808452 polypeptide=Potri.008G125700.1.p locus=Potri.008G125700 ID=Potri.008G125700.1.v4.1 annot-version=v4.1 ATGGGGTTACAAAACCAGCTGAACGATGTGTCTTCTGAATCGATCCCGTTACTCCTTATAGCATTCATAGCCAACTGTGTTGCCTGCCTTCGCTCTTTCT TTTTCAGCGTTTTCCACTCCGTGGGCGTTCACCGATTGGACCAAGCCCACGTTATGGATGATAGGCTGATGGGCTCAATGGGCTCTGGTCTTGCCGGCCT GATCGTGCTTGCCGAGCAGCGTAAACTCAACCGGGTATTTGCTTACAAGTATTGTTGCGGTCGTGATGATGGAAATGACAAGGGAGGATCGGATTGTGTG GTGTGCTTGTGCACGCTAAGGGATGGGGACCAGGTGAGGAAGCTCGATTGCCGCCACGTGTTTCACAAGGAATGTTTTGATGGATGGCTTGATCATCTCA ATTTTAACTGCCCTCTTTGTCGGTGGCCGCTTGTTTCCGATGAGCGCGTTGAAGAAACGCGAAGGCGCGTGGGGGAGAACTTAGTGGAGTGGTTCTCCCT GAGATGA
AA sequence Show only first row Show all	>Potri.008G125700.1 pacid=42808452 polypeptide=Potri.008G125700.1.p locus=Potri.008G125700 ID=Potri.008G125700.1.v4.1 annot-version=v4.1 MGLQNQLNDVSSESIPLLLIAFIANCVACLRSFFFSVFHSVGVHRLDQAHVMDDRLMGSMGSGLAGLIVLAEQRKLNRVFAYKYCCGRDDGNDKGGSDCV VCLCTLRDGDQVRKLDCRHVFHKECFDGWLDHLNFNCPLCRWPLVSDERVEETRRRVGENLVEWFSLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.008G125700 [exp]	0	1	RHA2.1
AT2G38185			RING/U-box superfamily protein...		Potri.006G100400 [exp]	2.00	0.8549
					Potri.011G046112 [exp]	2.82	0.8590
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.008G081500 [exp]	10.00	0.8163
					Potri.008G005500 [exp]	12.24	0.8418
AT4G26840		ATSUMO1, SUMO1,...	ARABIDOPSIS THALIANA SMALL UBI...		Potri.002G224700 [exp]	12.84	0.8058	Pt-SUM1.1
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	12.96	0.8211
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	14.69	0.8104
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024600 [exp]	15.81	0.7919	HSP1.1
AT1G34300			lectin protein kinase family p...		Potri.019G086400 [exp]	21.07	0.7774
AT2G17710			unknown protein		Potri.005G107800 [exp]	21.79	0.8267

Compare expression of checked genes

Potri.008G125700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.