Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18210 452 / 3e-159 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G22950 434 / 8e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43660 338 / 3e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G48740 327 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G48700 296 / 2e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G47940 66 / 8e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043100 [exp] 505 / 4e-180 AT3G18210 554 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.012G051200 [exp] 470 / 8e-166 AT3G18210 531 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031064 [exp] 441 / 8e-155 AT3G18210 433 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10035445 [exp] 348 / 9e-112 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000171 [exp] 148 / 4e-43 AT1G22950 171 / 3e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G125800.4 pacid=42806518 polypeptide=Potri.008G125800.4.p locus=Potri.008G125800 ID=Potri.008G125800.4.v4.1 annot-version=v4.1 ATGTCTACGGATGACGCGACTGAAAAAGCGAGAGAGAATGGGAACGGCGTCGAATTGCCGTCAACGCAAAGGCTGATACCGTTCGAGAACAAGGAGCACA ACCCGGAGAGCTACGAGGACATGCAATTGGATTACAGTCCTCTCCTCTTTAGCTCTCTAGAGCGGTACTTGCCTCCTAACATGCTCAATTTGCCGCGTGA TCGTAAAGTCCACTTCCTGAGTGACATTCTGACTCGCTACTCTCCTCAGGGTGAACACACTCGCGTTCAAAAGCATCGAAAGTACAGACAGCAGATTCTA TCAAACTATGAGCCTAGACATAAGGAGCTGTATACTATGAATGCTGCAAATTTCTTTGTTCCTTCATTTCTCAAAGCAATCAGTGAGAACTCAGAAGAGA GTTTCAGAAGCATAATGGTGGAACCTACACCAGGAGTTTATACATTTGAAATGTTTCAGCCAAAGTTCTGTGAAATGTTGATGGCTGAGGTAGAAAGCAT GGAAAGATGGGTGCATGATCAAAGGTTCCATATAATTTGTCCGAACACTATGAACAAATATGGTGTTGTTCTTGATGACTTTGGACTGGAAACCATGCTT AACAAGTTGATGGATGGCTATATATGTCCCATGTCTAGAGTTTTCTTTCCTGAGGTGGGTGGATTAACTCTGGATTCTCACCATGGTTTTGTTGTTGAAT ACGGAGTGAATAGGGATATCGAGCTTGGTTTCCATGTTGATGATTCTGAAGTTACCTTGAATGTTTGCTTGGGTGAGCAATTTTATGGTGGAGATTTGTT CTTTCGTGGTGTTCGATGCGATAAACATGTGAATACAGAAACCCAATCAGAGGAGGTTTTTGATTATGCCCACATTCCGGGACGGGCAGTTCTTCATCGT GGTCGCCATCGGCATGGTGCAAGAGCGACTATTTCTGGGCACCGGGTCAACTTGGTTATATGGTGCAGAAGTTCAGTTTTTCGAGAGCTGAAGAAACATC AAAACGATTTTTCCAGCTGGTGTGGAGATTGTCGACGTGAGAAAAAAGAAAGACAACATCTGTCAGTTGCTGCTACCAAACTGGAATTGCTGAAGAGGGA TGGTATATCTGCATCCTGA
AA sequence Show only first row Show all	>Potri.008G125800.4 pacid=42806518 polypeptide=Potri.008G125800.4.p locus=Potri.008G125800 ID=Potri.008G125800.4.v4.1 annot-version=v4.1 MSTDDATEKARENGNGVELPSTQRLIPFENKEHNPESYEDMQLDYSPLLFSSLERYLPPNMLNLPRDRKVHFLSDILTRYSPQGEHTRVQKHRKYRQQIL SNYEPRHKELYTMNAANFFVPSFLKAISENSEESFRSIMVEPTPGVYTFEMFQPKFCEMLMAEVESMERWVHDQRFHIICPNTMNKYGVVLDDFGLETML NKLMDGYICPMSRVFFPEVGGLTLDSHHGFVVEYGVNRDIELGFHVDDSEVTLNVCLGEQFYGGDLFFRGVRCDKHVNTETQSEEVFDYAHIPGRAVLHR GRHRHGARATISGHRVNLVIWCRSSVFRELKKHQNDFSSWCGDCRREKKERQHLSVAATKLELLKRDGISAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.008G125800 [exp]	0	1
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.002G175700 [exp]	5.09	0.6185
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.003G064300 [exp]	5.29	0.5885
					Potri.003G203701 [exp]	6.32	0.6090
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.019G125300 [exp]	8.12	0.5863
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052200 [exp]	14.49	0.5791
AT3G08890			Protein of unknown function, D...		Potri.016G125300 [exp]	16.15	0.5799
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.005G137600 [exp]	20.78	0.5510
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.015G141400 [exp]	24.73	0.5969
AT2G11890			adenylate cyclases (.1.2)		Potri.003G198200 [exp]	28.80	0.5876
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	31.49	0.5177

Compare expression of checked genes

Potri.008G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.