Plant FIBer expression Database

Potri.008G126300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01120 601 / 0 ORC4, ATORC4 origin recognition complex subunit 4 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007944
[exp]
632 / 0 AT2G01120 554 / 0.0 origin recognition complex subunit 4 (.1.2)
Lus10013481
[exp]
470 / 7e-166 AT2G01120 296 / 8e-98 origin recognition complex subunit 4 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF13191 AAA_16 AAA ATPase domain
CL0671 AAA_lid PF14629 ORC4_C Origin recognition complex (ORC) subunit 4 C-terminus
Representative CDS sequence
>Potri.008G126300.4 pacid=42806658 polypeptide=Potri.008G126300.4.p locus=Potri.008G126300 ID=Potri.008G126300.4.v4.1 annot-version=v4.1
ATGGGAATCGAAAATCTAGCCGAGAAAGCACAAATTCTGATAAGGAGCAGACTCTGTAACCCTAATTTCATCTTCAAGCCTCTCTCTGATTCCCCTGACA
GCAACTACAGCAAGTTGAAGTTTATAATATCGAGTTCAATCATGGAGGCTTGCAACAATTCTATTCTGCTTCTTGGACCCCGTGGCTCTGGCAAAGTCGC
GGTATTGGAGCTTGTTCTCAGCGACTTACTGGAGGAATATCCCGACACAATCACTGTCATCAGATTGAATGGGCTATTGCATAGTGAGGACAACTCTGCC
TTCAAGGAAATTGCCAGACAACTATGTATGGAGCATCATTTGTTGTTCTCAAAAATGGCTTCTTTTGACGATAACTCCCAGTTTATGATAGCCATGTTAA
GGGAGTGTGGATTAGCACATAAAACAGTTATTTTTGCACTTGATGAGTTTGACCTATTTGCCCAGGGGAAACAACGACTACTTTATAGCTTGTTGGATGC
GATGCAATCCGTAACATCTCAGGCTGTTGTTGTTGGTGTTAGTTGCCGGTTGGATGCGGATCAGCTTTTGGAAAAAAGAGTGAGATCTCGGTTTTCTCAT
AGGAAGTTACTGTTTCTTCCTCCATCTAAGGAAGATGTACAAAGATTGCTGGAGCACATCCTATCTTTGCCAATGGACTCAAGTCTTGCCCATGACTACG
CTGCTGAGTTCAATGAAAAGCTTCAAAGTATTTTAGCAGACGAGAGATTCAAAGAAATCATCAGCAATTATCTGAACTCCAATTCTACCACCAATCATTT
ATTGAGATTTCTATTTATTGCCATCTCAAATATGGAATTGAAATCGGGGTTCTTGTCACTTGAGAACTTCAAAGCTGCACTTTCGAGCATCCAAAGGCAA
CCAAAGCAGGAATGCATAAAAGATTGCTCCATCTTGGAACTCTACATCCTTGTATGCATGAAAAGGTTGGAAATTAGAGAGCAAAATTCTTACAACTTCA
GTTCAGTAATGAAAGAGTACAAAAGCATACATGATTCGTTCCCGACATCTGATTATTATGCGCAAAATGTTTGCTTACGGGCATTTGAACACCTCCTTCA
ACGTGAGTTAATTTGTTTCACAGACAACAGAGGTCACAGTCAATCTATTGAATTCCGTCAAGTGAAGCTTGTAGTCTCGTATGCTGAACTACAAGAGGGG
CTGAAATCGTATCGATCCTGTCCTGCCATTCTTCTAAAATTAATTGATCGCTGA
AA sequence
>Potri.008G126300.4 pacid=42806658 polypeptide=Potri.008G126300.4.p locus=Potri.008G126300 ID=Potri.008G126300.4.v4.1 annot-version=v4.1
MGIENLAEKAQILIRSRLCNPNFIFKPLSDSPDSNYSKLKFIISSSIMEACNNSILLLGPRGSGKVAVLELVLSDLLEEYPDTITVIRLNGLLHSEDNSA
FKEIARQLCMEHHLLFSKMASFDDNSQFMIAMLRECGLAHKTVIFALDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVVGVSCRLDADQLLEKRVRSRFSH
RKLLFLPPSKEDVQRLLEHILSLPMDSSLAHDYAAEFNEKLQSILADERFKEIISNYLNSNSTTNHLLRFLFIAISNMELKSGFLSLENFKAALSSIQRQ
PKQECIKDCSILELYILVCMKRLEIREQNSYNFSSVMKEYKSIHDSFPTSDYYAQNVCLRAFEHLLQRELICFTDNRGHSQSIEFRQVKLVVSYAELQEG
LKSYRSCPAILLKLIDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01120 ORC4, ATORC4 origin recognition complex sub... Potri.008G126300
[exp]
0 1
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Potri.006G188700
[exp]
2.82 0.9320
AT2G41450 N-acetyltransferases;N-acetylt... Potri.006G045100
[exp]
3.74 0.9277
AT4G16970 Protein kinase superfamily pro... Potri.001G151900
[exp]
5.47 0.9263
AT3G63480 ATP binding microtubule motor ... Potri.005G038900
[exp]
5.65 0.9130
AT3G55490 GINS complex protein (.1) Potri.010G189200
[exp]
6.00 0.9194 Pt-TTN10.2
AT2G20980 MCM10 minichromosome maintenance 10 ... Potri.009G134500
[exp]
6.92 0.9253
AT3G59550 ATSYN3, SYN3, A... SISTER CHROMATID COHESION 1 PR... Potri.001G225600
[exp]
7.41 0.9239 SYN3.1
AT1G26840 ORC6, ATORC6 ARABIDOPSIS THALIANA ORIGIN RE... Potri.011G083700
[exp]
9.48 0.8897
AT1G07270 Cell division control, Cdc6 (.... Potri.001G250200
[exp]
11.40 0.9106
AT4G02060 MCM7, PRL PROLIFERA, Minichromosome main... Potri.014G121000
[exp]
12.00 0.9125 PRL.2

Potri.008G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.