Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22970 363 / 1e-124 unknown protein AT1G71150 352 / 2e-120 unknown protein AT1G22980 262 / 3e-85 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117100 [exp] 447 / 8e-158 AT1G22970 283 / 2e-93 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034613 [exp] 468 / 4e-166 AT1G71150 369 / 2e-127 unknown protein Lus10021799 [exp] 466 / 2e-165 AT1G71150 363 / 5e-125 unknown protein Lus10007946 [exp] 137 / 7e-39 AT1G71150 144 / 4e-42 unknown protein Lus10007947 [exp] 131 / 1e-37 AT1G71150 102 / 3e-27 unknown protein Lus10013482 [exp] 54 / 7e-08 AT2G01110 441 / 2e-154 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13324 [poplar] [flax] GCIP Grap2 and cyclin-D-interacting
Representative CDS sequence Show only first row Show all	>Potri.008G126400.1 pacid=42807817 polypeptide=Potri.008G126400.1.p locus=Potri.008G126400 ID=Potri.008G126400.1.v4.1 annot-version=v4.1 ATGGGAAAAGCGGAGAGAGAGCGTCTGAATCAAAGTCTGAGTGGGCACCTTAACACCATCCACGAGACCCTTCAGCTGTTGGATCAAACACCAGCTTCGT CGCTTGATAAACTGTGCTGGGATGATGTTGTTAAAACGGGTGATCAAGTCTCCAAGCAAGCTACTATCGTTGGAATGCTTTGGACTGGGGAAACACCAGA AGCTAAAGCAGTTGAAGAAAACATGGTAACATACTTCAATACACTGCAGGGTCTGCTTCTGCTTTCTCATGGAAGTATGGTTGGTGCAGGACCTACTCTT TCATCTGCTATCCATGCATCCATTAAGCAAGTTGTTGACTGCAGTTTTAAGTTGATGATGGAAACTGTCTCCTCATATGGATCTCGCAATAAGGACTTCA AACTTGTAGTACCACAATTAGTTGGTGCGGTATGGGAAGCATGCGATGCTCTTAAGAAGACTCCGGCTTCAAATATCACAGCAATTGGGCGAGCAATGAC ACAGGTTGCAGTTTCAGTGAAGGATGTTCTTCGGGAGATGAAGGAGCTCAAACCAGGTCCTTCCAATCAAACAGAAGCAGCTTCTCATGATGTTGCTTCT CATGATGATACTAGACTCAATGACAATGATAGCCTGAGTGATGATCTAGGCAATGACTTGTCACCTGAGGAGATGAAAGTTGCTCAAACAGCTATTGGGG TTATGACTGAGACAGTTGTAGTCCTAAAAGAACTCATCCGCACTATTACTGGTTTGCTTAAACAGGAAAAGCCTAAAGACAGTGGCAATTTCGTGGACAC TCTGGAGAAGTTATTGAAGCTGTGCCAAGAAATCGGAGTGCAGATTGATGAGCTTGGAGCCTCTCTTTATCCCCCGCAAGAATTTCCAGCTTTGAAGGCA GCTTTGGAGAAAATATCTAGTATTATTGATGAAGTGCGGTCGAAGGTGGAAAGTTTGACAAGCCCTTCGGAAGCTATTTTCCAGGCATGCAATGATTTGA AAAGCTCAATGAAACAAATGGAAGTGACGCTGGATTGCTGTAGCACCAGCGAAATAGAATCCATAATGCAGAATGTTTCTCTAGGCTAA
AA sequence Show only first row Show all	>Potri.008G126400.1 pacid=42807817 polypeptide=Potri.008G126400.1.p locus=Potri.008G126400 ID=Potri.008G126400.1.v4.1 annot-version=v4.1 MGKAERERLNQSLSGHLNTIHETLQLLDQTPASSLDKLCWDDVVKTGDQVSKQATIVGMLWTGETPEAKAVEENMVTYFNTLQGLLLLSHGSMVGAGPTL SSAIHASIKQVVDCSFKLMMETVSSYGSRNKDFKLVVPQLVGAVWEACDALKKTPASNITAIGRAMTQVAVSVKDVLREMKELKPGPSNQTEAASHDVAS HDDTRLNDNDSLSDDLGNDLSPEEMKVAQTAIGVMTETVVVLKELIRTITGLLKQEKPKDSGNFVDTLEKLLKLCQEIGVQIDELGASLYPPQEFPALKA ALEKISSIIDEVRSKVESLTSPSEAIFQACNDLKSSMKQMEVTLDCCSTSEIESIMQNVSLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22970			unknown protein		Potri.008G126400 [exp]	0	1
AT1G03150			Acyl-CoA N-acyltransferases (N...		Potri.005G210400 [exp]	4.00	0.7328	SGB903
AT2G35795			Chaperone DnaJ-domain superfam...		Potri.006G131200 [exp]	5.00	0.7390
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Potri.003G023800 [exp]	13.49	0.6508
AT5G56940			Ribosomal protein S16 family p...		Potri.004G217400 [exp]	13.56	0.7071	Pt-RPS16.2
AT5G38890			Nucleic acid-binding, OB-fold-...		Potri.013G050400 [exp]	13.60	0.7047
AT5G12240			unknown protein		Potri.001G274400 [exp]	17.32	0.6437
AT3G21310			Core-2/I-branching beta-1,6-N-...		Potri.001G195900 [exp]	21.63	0.6658
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Potri.001G207900 [exp]	21.67	0.6865	EMB143.2
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Potri.009G097600 [exp]	23.04	0.6876	RPB36.2
AT5G40530			S-adenosyl-L-methionine-depend...		Potri.001G344000 [exp]	23.15	0.6952

Compare expression of checked genes

Potri.008G126400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.