Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 546 / 0 MATE efflux family protein (.1) AT1G15150 523 / 0 MATE efflux family protein (.1) AT1G15180 518 / 0 MATE efflux family protein (.1.2) AT1G15160 516 / 0 MATE efflux family protein (.1) AT1G71140 491 / 3e-171 MATE efflux family protein (.1) AT2G04080 430 / 2e-147 MATE efflux family protein (.1) AT2G04100 429 / 7e-147 MATE efflux family protein (.1) AT2G04050 426 / 1e-145 MATE efflux family protein (.1) AT2G04090 421 / 1e-143 MATE efflux family protein (.1) AT2G04070 420 / 1e-143 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117000 [exp] 743 / 0 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 614 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 472 / 8e-164 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120500 [exp] 465 / 5e-161 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094700 [exp] 452 / 6e-156 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.004G094900 [exp] 446 / 1e-153 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.019G075800 [exp] 431 / 2e-148 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.017G120600 [exp] 429 / 5e-147 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094800 [exp] 428 / 5e-147 AT2G04100 479 / 2e-167 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018134 [exp] 622 / 0 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 595 / 0 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 577 / 0 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 568 / 0 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 567 / 0 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 514 / 2e-180 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 487 / 5e-171 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10000619 [exp] 486 / 1e-168 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 436 / 1e-149 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10009140 [exp] 433 / 3e-148 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.008G126500.4 pacid=42808733 polypeptide=Potri.008G126500.4.p locus=Potri.008G126500 ID=Potri.008G126500.4.v4.1 annot-version=v4.1 ATGGAAAAAGACACGAAAAAGAGCATGGAAGAGCGTTTACTACTACCAGAAAAGAGATCAAATGAGGGAAGAGAAGGTATAGCTCAAACATGGCGTGAGT TTACTCAAGAAGTGAAAAGGCTAGCTTACATAGCAGGACCCATGGTGGTTACTACGACAGCCCTCAACTTGTTGCTGGTTATTTCAAATATGATGGTGGG TCATCTTGGTGAGCTAGCTCTTTCTAGTTCTGCCATAGCTATCTCTCTCTGTAATGTTACCGGCATCAGTCTTCTAAATGGAATGGCAAGTGCACTGGAA ACTTTATGTGGGCAAGCTTATGGAGCTCAACAATATCGAAAAGTCGGAAACCAAACTTATGGTGCCATGTTCTCCCTAATTTTAGTTGCTCTCGTTGTAT CTCTGGTTTGGATCAACATGGAAACGCTGCTCATATTAATTGGCCAAGATCCCATAATTGCACACGAAGCTGGCCAGTTTACATTATGGCTCATTCCTAC CATTTTCGCTTATGCAATATTTCAGCCACTTTCTCGATACTTGCTAGTGCAAAGTATAATCATTCCAATGCTTGTAAGCTCTTGTGTCACTCTCCTCTTA CATATACCTCTATGCTGGCTTTTAGTATTCAAGTCTGGACTAAGAAACCTTGGAGGAGCATTAGCTGTCGGTATTTCATATTGGTTGAATGCAATTTTTC TTATATTATACGTTAAATACTCTCCCGCCTGTGCCAAAACCCGTGTCCCAATTTCTATAGAACTGTTCCAAGGAATCGGAGAGTTCTTCCGCTTTGCTAT ACCATCTGCAATGATGATTTGCCTGCAATGGTGGTCATATGAGATTGTCATCCTGCTATCAGGGCTCTTATCAAATCCACGACTTGAGACTTCAGTCCTG TCTGTATGTTTAACAACGATCGGAACACTCTATTCAATTCCATATGGACTAGGCGCAGCAGCCAGCACTAGAGTCTCAAATGAATTAGGAGCTGGGCGCC CGCAAGCAGCACGTATTGCTGCCTACTCTGTGATGATTCTTGCAATAATAGAGTTATTTGTTGTGAGTGGAACCCTCTTTGCCACGCGACACATTTTTGG TTACAGTTTCAGCAATGAGAGGGAAGTGGTGGACTATGTCTCCAACATGGCCCCTCTGGTTTGCCTGTCTGTTATAATAGATGGCTTACAAGGGGTGCTT TCAGGTGTTGCAAGGGGATGTGGTTGGCAGCATATAGGGGCTTCCGTCAATCTTGCAGCATTATATCTATGTGGCGTTCCCGTTGCTGCCATACTGGGCT ATTGGTTTCAGTTGAAAGCAAGGGGCCTTTGGATTGGCATACAAGCCGGTGCCATTTTGCAAACAGTTCTGCTGTCTCTTGTAACAAGTTGTACGAACTG GGAAAAACAGGCAAGGCAGGCAAGGGAAAGGGTATTTGAGGAAAGATCTTCAGAAGAAAACACTTTAGCGTGA
AA sequence Show only first row Show all	>Potri.008G126500.4 pacid=42808733 polypeptide=Potri.008G126500.4.p locus=Potri.008G126500 ID=Potri.008G126500.4.v4.1 annot-version=v4.1 MEKDTKKSMEERLLLPEKRSNEGREGIAQTWREFTQEVKRLAYIAGPMVVTTTALNLLLVISNMMVGHLGELALSSSAIAISLCNVTGISLLNGMASALE TLCGQAYGAQQYRKVGNQTYGAMFSLILVALVVSLVWINMETLLILIGQDPIIAHEAGQFTLWLIPTIFAYAIFQPLSRYLLVQSIIIPMLVSSCVTLLL HIPLCWLLVFKSGLRNLGGALAVGISYWLNAIFLILYVKYSPACAKTRVPISIELFQGIGEFFRFAIPSAMMICLQWWSYEIVILLSGLLSNPRLETSVL SVCLTTIGTLYSIPYGLGAAASTRVSNELGAGRPQAARIAAYSVMILAIIELFVVSGTLFATRHIFGYSFSNEREVVDYVSNMAPLVCLSVIIDGLQGVL SGVARGCGWQHIGASVNLAALYLCGVPVAAILGYWFQLKARGLWIGIQAGAILQTVLLSLVTSCTNWEKQARQARERVFEERSSEENTLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15170			MATE efflux family protein (.1...		Potri.008G126500 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.008G041500 [exp]	6.48	0.7974
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.001G285900 [exp]	6.92	0.7781
AT3G25930			Adenine nucleotide alpha hydro...		Potri.010G123300 [exp]	6.92	0.8461
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G093900 [exp]	7.07	0.7328
AT5G05800			unknown protein		Potri.005G153700 [exp]	16.43	0.8338
					Potri.001G103200 [exp]	17.32	0.7752
					Potri.008G040601 [exp]	17.40	0.6835
					Potri.001G168400 [exp]	17.86	0.7637
AT1G55790			Domain of unknown function (DU...		Potri.003G101200 [exp]	17.88	0.7441
AT3G13690			Protein kinase protein with ad...		Potri.014G038300 [exp]	20.78	0.7290

Compare expression of checked genes

Potri.008G126500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.