Plant FIBer expression Database

Potri.008G126700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15140 395 / 7e-140 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G116500
[exp]
442 / 5e-158 AT1G15140 368 / 1e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035265
[exp]
364 / 7e-120 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10034633
[exp]
325 / 3e-112 AT1G15140 316 / 3e-108 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Lus10013488
[exp]
240 / 8e-81 AT1G15140 244 / 1e-82 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Lus10007955
[exp]
237 / 1e-79 AT1G15140 236 / 2e-79 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Lus10007954
[exp]
137 / 4e-40 AT1G15140 138 / 6e-41 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0091 NAD_Ferredoxin PF00175 NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence
>Potri.008G126700.1 pacid=42806945 polypeptide=Potri.008G126700.1.p locus=Potri.008G126700 ID=Potri.008G126700.1.v4.1 annot-version=v4.1
ATGACTGTCCTACGCCGCCTAGCTCCAAACCACCTAACCACACACCTCAGACACCACCGCATGCGGCGTCTAGCCACGGTCGCCGCTGCAGTATGGCAAG
ACACAACAGTCTGGACACAAGCGCCTCTCTCCGGGATCGAACCAGCAGCCGAATCACTCTTCCACGTGAGAATCGACGTTTTAGACTCTCCAGACCTCGC
AGCGTCACACACACGTGCTGGACAGTACTTACAGCTACGCGTCCCCGACGTGGAGAAGCCATCGTTCCTGGCCATCGCCTCGCCGCCGTCCGACGCAGCT
TCAAAAGGTGCGTTTGACTTTTTGGTGAAGAGCGTGGCTGGATCGACGGCAGAGCTGTTGTGCGGGCTTAAAAGAGGAGATGTGGTGGAATTGAGCCAAG
CTATGGGTAGAGGTTTCGACATTGAACAAATTGAGCCTGCCGAGAAATATCCCACGGTTCTGATTTTCGCCACTGGATCTGGTATCAGTCCAATTCGATC
TCTTATTGAGTCAGGTTTTAATGCTGATAAAAGATCTGATGTGAGGCTGTATTATGGGGCTAGAAACGTAAAGAGAATGGCTTACCAGGATAGGTTTAAA
GACTGGGAGTCTTCTGGTGTTAAGATCGTGCCAGTGTTATCACAACCAGATGATAATTGGACGGGTGAAAGTAACTATGTACAGGCTGCTTTTTCCAGGG
CCAAGCAAATTTATAGTCCTACAGGCACTGGTGTTGTTCTCTGTGGGCAGAAACAGATGACTGAGGAAATAACATCAATTCTTGTATCAGATGGAGTCTC
AAGTGAGAAAATTCTGAAGAACTTCTGA
AA sequence
>Potri.008G126700.1 pacid=42806945 polypeptide=Potri.008G126700.1.p locus=Potri.008G126700 ID=Potri.008G126700.1.v4.1 annot-version=v4.1
MTVLRRLAPNHLTTHLRHHRMRRLATVAAAVWQDTTVWTQAPLSGIEPAAESLFHVRIDVLDSPDLAASHTRAGQYLQLRVPDVEKPSFLAIASPPSDAA
SKGAFDFLVKSVAGSTAELLCGLKRGDVVELSQAMGRGFDIEQIEPAEKYPTVLIFATGSGISPIRSLIESGFNADKRSDVRLYYGARNVKRMAYQDRFK
DWESSGVKIVPVLSQPDDNWTGESNYVQAAFSRAKQIYSPTGTGVVLCGQKQMTEEITSILVSDGVSSEKILKNF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15140 FAD/NAD(P)-binding oxidoreduct... Potri.008G126700
[exp]
0 1
AT1G03910 unknown protein Potri.001G242900
[exp]
8.36 0.9684
AT5G11090 serine-rich protein-related (.... Potri.018G023300
[exp]
10.00 0.9331
AT3G12580 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN... Potri.001G042700
[exp]
12.64 0.9644 Pt-HSP70.10
AT2G20880 AP2_ERF AtERF53 ERF domain 53, Integrase-type ... Potri.019G102200
[exp]
15.16 0.9211
Potri.006G055100
[exp]
19.07 0.8677
AT4G27670 HSP21 heat shock protein 21 (.1) Potri.015G005801
[exp]
21.21 0.9632
AT4G16265 NRPE9B, NRPD9B,... RNA polymerases M/15 Kd subuni... Potri.010G142500
[exp]
23.36 0.9628
AT5G40690 unknown protein Potri.001G336200
[exp]
24.18 0.9193
AT2G29500 HSP20-like chaperones superfam... Potri.009G147900
[exp]
24.79 0.9601
Potri.014G065951
[exp]
25.51 0.9618

Potri.008G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.