Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15130 1166 / 0 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116400 [exp] 1352 / 0 AT1G15130 1079 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034634 [exp] 1146 / 0 AT1G15130 1113 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035265 [exp] 858 / 0 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [poplar] [flax] BRO1 BRO1-like domain PF13949 [poplar] [flax] ALIX_LYPXL_bnd ALIX V-shaped domain binding to HIV
Representative CDS sequence Show only first row Show all	>Potri.008G126900.1 pacid=42808608 polypeptide=Potri.008G126900.1.p locus=Potri.008G126900 ID=Potri.008G126900.1.v4.1 annot-version=v4.1 ATGGCTGGCCAATCCTCATCCACATCTACGGCCACTAACATCATGCTAGCAATTCACGAGAAAAAGACAACCTCCCTCGACCTCTACCGTCCTCTCCGCA ACTACATCTCCATGTTTTACTCCGAACGCGAAGCTCAAAACCTCGAAGACGATCTCCAAACCGTCAAACAGTACCGTTCCGATCTTGAACGCCAACCCGA CCCGTCCCCTACTTCCCGCCGCGACCTCCTCCAAAAATACTTTAAAGCCCTCTGTTTAATCGAAACCCGATTCCCAATCTCCCCCGACAGCGATCACATC AATACGGTCACGTTTGTCTGGTACGATGCGTTTAAGCAAAAACAGAAAGCGTCGCAACAGAATATTCATTTAGAGAAGGCTGCTGTGCTTTTTAATTTGG GTGCCGTTTATAGTCAGATGGGGTTGTCGTTTGATCGGGCCACGGTGGAGGGGAGGAGACAGGCGATTCATGCGTTTATTGCTGCCGCTGGATCGTTTGC TTTCTTGAGAGATAATGCGGCAACGAAAGCGTCCATGGGGACGAGTACGACGGTTGATTTGTCTGTCGAGTGTGTTGGGATGTTGGAGAGGTTGATGCTT GCACAAGCGCAGGAGTGTGTTTTTGAGAATACTATTGCTAAAGGGAGTACGCCGGGTGTTTGTGCCAAGATTTCTCGGCAGGTTGGGTTGTACTACGAGG AAGCTTTAGCAGCACTGAATGTTGCATCTCTAAAAGATCATTTTGACAAGGGTTGGATTGCCCATGTCCAACTAAAAGCAGCTCTATTCTATGCAGAAGC CTGTTACCGGTATAGTTTGGAGCTTCATGAGAAAGAAGAAATTGCAGAAGAAATTGCACGGTTGAAGAGTGCGTCTAGTACGTTAGCAGAGGTGAAGAAA AGTTCAAGGGGGGCTGCAGCACAGATTCTGGATGCAATTAGCAAGCTGGAAGCTAATATCAACCGCAATCTGGACAGGGCTGTCAAGGAAAATGATAGAG TTTACCTCATGAGGGTTCCTTCCCCTAGTTCCTTACCCCCTCTCCCAGCATTTTCCATGGTAAAGATCATGCCAATGAACGAGGTACTTGATGCCAGCAA GGAAAAGATGTTTGCTAGTCTTGTTCCAGACAGCAGTGCAAAAGCTCTTTCAAGGTACACTGAAATGGTCGATGATATTATCAGGACACAAGCTGAAAAA TTGCAACAAGGGAGTGAGCTAACTCGAGTGAGGCTCAAAGAAATGGACCTGCCAGATTCAATTCTTTCTTTGGAAGGAAACTTTACGCTTCCAACAGATC TTAAAGAAGATGTGGAAGCAGTGCAAATTAGTGGGGGCCCAGCTGGCCTTGAAGCTGAGTTACAGCAACTTATGGATTTGAGGAGGGTAAACCATGAATT GCTGGTTCAGACCGAGGAACTTCTGCAGAAGGAAGCAACAGAAGATGCCCAATTTAGAAGTCAATTTGGGACACGGTGGACTAGGCCCCAATCCAGCACT TTGACAAAGAACTTGCAGGATAGATTAAATAGGTTTGCAGCCAACTTAAAGCAAGCTGCAGATAGCGATGCCAGAATTGAGCGCTCAGTGAGGGATCATT CTGCGCTCATGTCAATTCTTGATCGCCGACCGATAGAATCTGCACTTCCAACTTTAGCTAGGCCAATAATGTCTTTGGATGCTAATGAAGATGCTATAGT GGGGGCCTTGAAGCAGAGCTTGAGGCAATTGGAGACTCTTGGCGCTCAACGAGCTGGTCTCGAGGACATGCTCAAAGAGATGAAACGGAAGGATGATGTC CTGCCAAAGCTGATGACATCCACTGGGTCCTATGAAGATCTTTTCAGGAAAGAGATAGCAAAATATGATCCCATCCGTGAAGACATTGCACAAAATATTG AGGCGCAAGAACAGTTGTTGCTGCAAATTCAGGCTCAAAATGAAGAGTTTTCTGCTGTCTTCAATCTTGAAGATTACAAAGCATCTCGTGAGAAGTGTTA TAAGCAAATACAGGCTGCCATAGCCAAGTATCGAGAAATAAAGGAGAACATCAACGAGGGATTGAAGTTTTATGTTACTCTTCAGGACGCCATCACCAAT ATCAAACAGCAGTGCAGTGATTTTGTGATGACCAGAAATATCCAGTGTCGAGAAATGATTGAAGATGTGCAAAGACAAATGGCTGGACTAAGTTTTCAAG ATCGTAAAAACACAGGCTCGTACAGCTATCCTGCAGTAAACCAGCCCCATCAGACTCCAAGATCCAGTTCGCAGCCTCCATCGGATCCTCAAAATGTTCC ACATCCTCGCTCCCAAACATCGTACTACCAGCCTCATGAGCAATCTACAATGCCTGCTTATGCCCACCCTCCATCCCCTTATACAACACCACAACAACCA CCTCCCTATCATATCCCCCCCGCTCCTGGTGCTCCTTACCCACCCCCACAGGTTCAACAACCAACAAGCCAGGAGTATGGCCAGCCTGCCTATCCAGGGT GGCGGGGCCCATATTACAATGCCCATGGACAACAATCTGGATCTCTCCCTCGGCCTCCTTACACTATTCCAGGTCCATACCCTCCTCACCAAGGCTACTA TAAACAATAG
AA sequence Show only first row Show all	>Potri.008G126900.1 pacid=42808608 polypeptide=Potri.008G126900.1.p locus=Potri.008G126900 ID=Potri.008G126900.1.v4.1 annot-version=v4.1 MAGQSSSTSTATNIMLAIHEKKTTSLDLYRPLRNYISMFYSEREAQNLEDDLQTVKQYRSDLERQPDPSPTSRRDLLQKYFKALCLIETRFPISPDSDHI NTVTFVWYDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQMGLSFDRATVEGRRQAIHAFIAAAGSFAFLRDNAATKASMGTSTTVDLSVECVGMLERLML AQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVASLKDHFDKGWIAHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSASSTLAEVKK SSRGAAAQILDAISKLEANINRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKIMPMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDIIRTQAEK LQQGSELTRVRLKEMDLPDSILSLEGNFTLPTDLKEDVEAVQISGGPAGLEAELQQLMDLRRVNHELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSST LTKNLQDRLNRFAANLKQAADSDARIERSVRDHSALMSILDRRPIESALPTLARPIMSLDANEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDV LPKLMTSTGSYEDLFRKEIAKYDPIREDIAQNIEAQEQLLLQIQAQNEEFSAVFNLEDYKASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITN IKQQCSDFVMTRNIQCREMIEDVQRQMAGLSFQDRKNTGSYSYPAVNQPHQTPRSSSQPPSDPQNVPHPRSQTSYYQPHEQSTMPAYAHPPSPYTTPQQP PPYHIPPAPGAPYPPPQVQQPTSQEYGQPAYPGWRGPYYNAHGQQSGSLPRPPYTIPGPYPPHQGYYKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15130			Endosomal targeting BRO1-like ...		Potri.008G126900 [exp]	0	1
AT5G08139			RING/U-box superfamily protein...		Potri.015G047900 [exp]	4.00	0.8744
AT1G32610			hydroxyproline-rich glycoprote...		Potri.003G091800 [exp]	4.24	0.8748
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Potri.001G150400 [exp]	5.29	0.8893
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	7.21	0.8806
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.008G149900 [exp]	7.93	0.8867
AT3G60850			unknown protein		Potri.014G070200 [exp]	7.93	0.8652
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.015G005500 [exp]	10.09	0.8156
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G324800 [exp]	11.83	0.8566
AT3G57120			Protein kinase superfamily pro...		Potri.008G037501 [exp]	12.12	0.8166
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Potri.001G134800 [exp]	13.71	0.7969

Compare expression of checked genes

Potri.008G126900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.