Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71120 479 / 2e-170 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT1G71250 180 / 3e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G53920 176 / 1e-51 GLIP5 GDSL-motif lipase 5 (.1) AT5G15720 167 / 1e-48 GLIP7 GDSL-motif lipase 7 (.1) AT2G23540 167 / 4e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 164 / 2e-47 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 163 / 5e-47 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G14225 157 / 2e-44 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT5G33370 155 / 5e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G53100 153 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133500 [exp] 196 / 3e-59 AT3G14225 296 / 7e-98 GDSL-motif lipase 4 (.1) Potri.007G133766 [exp] 192 / 9e-58 AT3G14225 291 / 4e-96 GDSL-motif lipase 4 (.1) Potri.007G133700 [exp] 178 / 9e-53 AT3G14225 275 / 3e-90 GDSL-motif lipase 4 (.1) Potri.013G065100 [exp] 172 / 3e-50 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.003G071500 [exp] 171 / 8e-50 AT1G53920 436 / 3e-153 GDSL-motif lipase 5 (.1) Potri.017G136601 [exp] 171 / 1e-49 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.019G024700 [exp] 170 / 1e-49 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 170 / 2e-49 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.008G104600 [exp] 169 / 3e-49 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034635 [exp] 390 / 4e-135 AT1G71120 379 / 8e-131 GDSL-motif lipase/hydrolase 6 (.1) Lus10035266 [exp] 347 / 3e-119 AT1G71120 348 / 6e-120 GDSL-motif lipase/hydrolase 6 (.1) Lus10028423 [exp] 182 / 3e-54 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 175 / 1e-51 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 171 / 6e-50 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 168 / 9e-49 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 166 / 1e-47 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 166 / 1e-47 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 165 / 1e-47 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 164 / 6e-47 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.008G127100.1 pacid=42806332 polypeptide=Potri.008G127100.1.p locus=Potri.008G127100 ID=Potri.008G127100.1.v4.1 annot-version=v4.1 ATGGAGAAGCTATTTCTCATACTTCTCCTCCTCTCATCTTGTTCTTTGTTAGTCTCCTCCGCCAATGTATCTGCAATTTTCATATTTGGAGACTCCATCT TTGATGCTGGGAACAATCACTTCAACAAGAACTGCTCCGCTCAGGCCGATTTTCCACCTTATGGATCAAGTTTTTTCCACCGTCCCACCGGGAGGTTCAC TAATGGCAGAACAGTAGCTGACTTCATTTCACAATTTCTGGGGATCGAGTTCCAAAAGCCCTTCCTCGAGGCACAACTTGCAGTTGTGAATGGAAGCAGG GAGGACTATCCATCGAATGGCATCAACTTTGCAAGTGCTGGCAGCGGTGTTTTGCAGGCAACAAACCCGGACTGGGGAGTGATATCAATCCAGCAGCAGC TGCGACAATTTCAAGCACTGGTACAGCAAAATCAGATTGACAAAGACCTGGTCCAAAAATCCTTGTTCCTTGTGGAATCAGGATCCAATGACATTTTCAA CTATTTCCTCCCTTATGACACCCCAACTCTTGATCCTGGCGCCTTCGTGCAAGCCATGTTAACTGAAGTTGGGGATTTGATCGACCAAATTTACAAGCTT GGTGCTCGCCGCATTGCTCTATTTTCACTAGGCCCTGTTGGGTGTATTCCAGCAAGGGCCCTCTTGCCAGGCGCACCGGTTGATAAATGTTTTGGAAAGA TGAATTTGATGGTCAAGAAATATAACAAGGGATTGGAGAGCTTGGTCAATGATATGCCCATTAAATACCCTGGTGCAGTAGGTGTCTTTGGTGCTGTTTA TGATATTGTACAGAGATTTCGAGCTATTCCAGCACAATATCGCTTCTCTGATGTAACTAATGCATGCTGTGGTGATGGAACTCTTGGAGGATTGCTACAA TGTGGCAGGGAAGGCTACAAGATTTGTCCAAACCCTAATGCGTTCTTGTTCTGGGATTATTTTCATCCAACCGAACATACTTACAAGCTCATCTCCAAGG CACTGTGGGGTGGGAAAAACTCAAGAATCAGGCCAGTCAATTTGAAGACTCTAGCCAGCACACCTTGA
AA sequence Show only first row Show all	>Potri.008G127100.1 pacid=42806332 polypeptide=Potri.008G127100.1.p locus=Potri.008G127100 ID=Potri.008G127100.1.v4.1 annot-version=v4.1 MEKLFLILLLLSSCSLLVSSANVSAIFIFGDSIFDAGNNHFNKNCSAQADFPPYGSSFFHRPTGRFTNGRTVADFISQFLGIEFQKPFLEAQLAVVNGSR EDYPSNGINFASAGSGVLQATNPDWGVISIQQQLRQFQALVQQNQIDKDLVQKSLFLVESGSNDIFNYFLPYDTPTLDPGAFVQAMLTEVGDLIDQIYKL GARRIALFSLGPVGCIPARALLPGAPVDKCFGKMNLMVKKYNKGLESLVNDMPIKYPGAVGVFGAVYDIVQRFRAIPAQYRFSDVTNACCGDGTLGGLLQ CGREGYKICPNPNAFLFWDYFHPTEHTYKLISKALWGGKNSRIRPVNLKTLASTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Potri.008G127100 [exp]	0	1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073041 [exp]	76.65	0.7073
AT5G28780			PIF1 helicase (.1)		Potri.007G048501 [exp]	83.96	0.6750
AT5G58200			Calcineurin-like metallo-phosp...		Potri.018G111500 [exp]	113.57	0.6372
AT1G78720			SecY protein transport family ...		Potri.011G114200 [exp]	113.79	0.6372
AT1G18520		TET11	tetraspanin11 (.1)		Potri.015G055700 [exp]	154.44	0.6528
					Potri.009G023001 [exp]	206.70	0.6437

Compare expression of checked genes

Potri.008G127100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.