Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15020 694 / 0 QSO2, ATQSOX1 quiescin-sulfhydryl oxidase 1 (.1.2) AT2G01270 688 / 0 ATQSOX2 quiescin-sulfhydryl oxidase 2 (.1) AT2G47470 64 / 8e-11 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G21750 52 / 1e-06 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT2G32920 50 / 4e-06 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT5G60640 49 / 6e-06 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 47 / 2e-05 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G04980 45 / 6e-05 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT1G77510 46 / 7e-05 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G49880 42 / 0.0004 EMB3106, AtErv1, Erv1 EMBRYO DEFECTIVE 3106, Erv1/Alr family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115700 [exp] 907 / 0 AT2G01270 660 / 0.0 quiescin-sulfhydryl oxidase 2 (.1) Potri.014G122800 [exp] 68 / 4e-12 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 67 / 6e-12 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.005G179000 [exp] 60 / 3e-09 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 54 / 2e-07 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.014G160000 [exp] 48 / 1e-05 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.008G040100 [exp] 44 / 0.0002 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034639 [exp] 736 / 0 AT1G15020 662 / 0.0 quiescin-sulfhydryl oxidase 1 (.1.2) Lus10035269 [exp] 332 / 2e-111 AT2G01270 290 / 8e-96 quiescin-sulfhydryl oxidase 2 (.1) Lus10035270 [exp] 197 / 3e-61 AT1G15020 173 / 1e-52 quiescin-sulfhydryl oxidase 1 (.1.2) Lus10020691 [exp] 69 / 3e-12 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 67 / 1e-11 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 66 / 3e-11 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10042721 [exp] 49 / 1e-05 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10035360 [exp] 49 / 1e-05 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029681 [exp] 48 / 1e-05 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10031522 [exp] 46 / 5e-05 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] PF04777 [poplar] [flax] Evr1_Alr Erv1 / Alr family
Representative CDS sequence Show only first row Show all	>Potri.008G127300.2 pacid=42808007 polypeptide=Potri.008G127300.2.p locus=Potri.008G127300 ID=Potri.008G127300.2.v4.1 annot-version=v4.1 ATGTCTATGTCTAAAGCATCAGTGATTTTGACTGTGATCGTGCTCTTGCTAATTAGCTCCAAGGAAGCGGCGTCGATTCAGTCGGGATCGCGTTCGATCC TCCGAGCTGTAAGCAGCGAAAACAAAGCGCAGGTTGATTACGCTGTTGATTTGAATAGCACGAATTTCGATGCTGTTCTCCGTAACACTCCCGCTGCTCA CGCCATTGTCGAGTTCTTTGCTCACTGGTGCCCTGCTTGCAGAAATTATAAGCCCCAATACGAAAAGGTTGCAAGACTTTTCAATGGGCCTGATGCTGTG CATCCTGGTATTGCATTGATGACAAGGGTGGATTGTGCTTTGAAGATAAATAATAAACTCTGTGATAAATTTTCCGTGAGTCATTATCCTATGTTATTTT GGGGCCCACCTTCTAAATTTGCATCTGGTGGTTGGGAGCCCAAAGAAGAGAAGAGTGAAATACATGTCATTGATGATGGGCGGACAGCTGAAAGATTGCT TAATTGGATCAACAAGCAATTGGGCAGTTCATATGGCTTGGATGATGAGAAATTTGAGCATCTTCCTTCAAACATATCAGACCTTGGACAGATTGCACGT GCTGTGTATGATGTTGAGGAGGCTACATTCTTTGCCTTTGAAATCATACTTGAACACAAGATGATCAAACCACACACCCGGGCTTCACTTATTAAATTTC TTCAACTGTTAGTGGCCCATCATCCTTCAAAGAGGTGCCGAAAGGGAAGTGCAGAAGTGCTTGTGAATTTTGATGACTTGTGCCCACCAGATATGTGGTC ACCTGACAAACAGGAAGCTGTCAGTGATAACAAGGGGATGCTGGGGAATTTCCAGATTTGTGGGAAAGAAGTTCCTCGAGGATATTGGATGTTTTGCCGT GGCAGCAAGAATGATACCAGGGGCTTTAGCTGTGGTTTATGGGTTGTACTGCATTCACTCTCTGTGAGGATTGAGGATGGAGAGAGCCAGTTTGCATTCA CTGCAGTATGTGATTTTATCAACAACTTCTTTATATGCGAGGAGTGCCGTGAACATTTTTATCAAATGTGTTCAAGTGTCACTGCCCCTTTCAATACATC CCGTGACTTTGCCCTTTGGTTGTGGAGTGCCCATAATAAAGTCAATGAGAGATTAATGAAGGAAGAAGCTTCTGTAGGAACTGGTGACCCCAAGTTCCCA AAGATTATTTGGCCTCCAAAACAGCTCTGCTCTTCATGTCATCTCTCTAGTAACCACAGAGAGAATGGATTTGGTCAAATAGATTGGAACTTGAATGAAG TATACAAGTTCTTGACTGGTTATTATGGCAAAACTCTTGCATCTTTGTACAAGGAAAAAGATCGTCTTGGGGATGAAGTGAATGATGGGGCTATTGCAGA TTTAGTGGCCTCAACGAATGCAGTGGTGGTGCCTGTTGGGGCTGCGTTGGCAATCGCGCTTTCTAGCTGTGCATTTGGAGCGCTTGCTTGCTACTGGCGT TCTCAGCAAAAAAACCGAAAGTATTACCACCAACTACACTCTTTAAAGAACATCTGA
AA sequence Show only first row Show all	>Potri.008G127300.2 pacid=42808007 polypeptide=Potri.008G127300.2.p locus=Potri.008G127300 ID=Potri.008G127300.2.v4.1 annot-version=v4.1 MSMSKASVILTVIVLLLISSKEAASIQSGSRSILRAVSSENKAQVDYAVDLNSTNFDAVLRNTPAAHAIVEFFAHWCPACRNYKPQYEKVARLFNGPDAV HPGIALMTRVDCALKINNKLCDKFSVSHYPMLFWGPPSKFASGGWEPKEEKSEIHVIDDGRTAERLLNWINKQLGSSYGLDDEKFEHLPSNISDLGQIAR AVYDVEEATFFAFEIILEHKMIKPHTRASLIKFLQLLVAHHPSKRCRKGSAEVLVNFDDLCPPDMWSPDKQEAVSDNKGMLGNFQICGKEVPRGYWMFCR GSKNDTRGFSCGLWVVLHSLSVRIEDGESQFAFTAVCDFINNFFICEECREHFYQMCSSVTAPFNTSRDFALWLWSAHNKVNERLMKEEASVGTGDPKFP KIIWPPKQLCSSCHLSSNHRENGFGQIDWNLNEVYKFLTGYYGKTLASLYKEKDRLGDEVNDGAIADLVASTNAVVVPVGAALAIALSSCAFGALACYWR SQQKNRKYYHQLHSLKNI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Potri.008G127300 [exp]	0	1
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	2.00	0.9080
AT5G47830			unknown protein		Potri.002G123400 [exp]	2.82	0.8873
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.014G124200 [exp]	4.24	0.9055
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	6.70	0.8815
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.015G055200 [exp]	9.79	0.8803
AT1G19600			pfkB-like carbohydrate kinase ...		Potri.005G229100 [exp]	13.60	0.7928
AT1G06660		JASON	JASON, unknown protein		Potri.002G057000 [exp]	17.14	0.8601
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	17.23	0.8938
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	23.91	0.8631	Pt-SEC22.1
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	24.45	0.8612

Compare expression of checked genes

Potri.008G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.