Plant FIBer expression Database

Potri.008G127651 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G162550
[exp]
154 / 1e-48 ND /
Potri.005G225200
[exp]
93 / 9e-23 AT1G06190 145 / 1e-40 Rho termination factor (.1.2)
Potri.002G037800
[exp]
70 / 2e-14 AT1G06190 193 / 6e-59 Rho termination factor (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G127651.1 pacid=42805964 polypeptide=Potri.008G127651.1.p locus=Potri.008G127651 ID=Potri.008G127651.1.v4.1 annot-version=v4.1
ATGGATCCCACACAAATATGCGTTCGAAACGCAGGTGTAGCAAAAGCAAGTCTGACTTGCTTTTCGCCGTGGCTTCTGTTCAGAAAACGTTGCTTACAAT
TAATGTTCATTATCCAAAAAACAATTAGCCCAATCTGTCCTCCTCCACTGTGGCTTCCATCGTCTGTCCTCCTCCACAGCTTCAACCTCCACTGTGCTTC
CCTCGTCTCATGGATTTGTCCTCCTTCACGCAGCTTCCCTCTCTCAACCTCACACAGAACCATCTCCTTCCTGCTGCATTTTCCTCCCTGCAATCTTCCT
CTGCTCTCTCCACTCTGCTTCCCTTTGTCATGCCAAGCTCAACTGAGCAAGGTAAGAAAAAAACCAGCAATGTCAGCAGTGGAAACTTCAATCTGGACCA
GCCAGAGAATGGAGCATACAAGAAAGCTAAAGGCACAAGCTCCTTTAACTCAAGTAAGAAAGAAAGGAACGACGCCCATACATGTTTGA
AA sequence
>Potri.008G127651.1 pacid=42805964 polypeptide=Potri.008G127651.1.p locus=Potri.008G127651 ID=Potri.008G127651.1.v4.1 annot-version=v4.1
MDPTQICVRNAGVAKASLTCFSPWLLFRKRCLQLMFIIQKTISPICPPPLWLPSSVLLHSFNLHCASLVSWICPPSRSFPLSTSHRTISFLLHFPPCNLP
LLSPLCFPLSCQAQLSKVRKKPAMSAVETSIWTSQRMEHTRKLKAQAPLTQVRKKGTTPIHV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G127651
[exp]
0 1
AT3G16460 JAL34 jacalin-related lectin 34, Man... Potri.017G010900
[exp]
14.14 0.6124
AT5G15240 Transmembrane amino acid trans... Potri.017G083500
[exp]
15.62 0.7161
AT1G05200 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) Potri.014G152200
[exp]
17.23 0.5437
AT1G12640 MBOAT (membrane bound O-acyl t... Potri.003G121700
[exp]
30.29 0.6119
AT2G36960 MYB TKI1 TSL-kinase interacting protein... Potri.006G125400
[exp]
45.46 0.5775 Pt-TKI1.2
AT3G07870 F-box and associated interacti... Potri.011G037312
[exp]
63.28 0.5270
AT3G17430 Nucleotide-sugar transporter f... Potri.008G214300
[exp]
67.03 0.5377
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.018G134700
[exp]
87.24 0.5374
AT2G47680 C3HZnF zinc finger (CCCH type) helica... Potri.002G204750
[exp]
92.05 0.5158
AT4G27950 AP2_ERF CRF4 cytokinin response factor 4 (.... Potri.012G032900
[exp]
103.34 0.5387

Potri.008G127651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.