Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71070 574 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 375 / 9e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 367 / 2e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 356 / 2e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 348 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 345 / 2e-116 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 345 / 6e-116 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G24040 324 / 4e-108 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 314 / 4e-104 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 310 / 5e-103 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114800 [exp] 722 / 0 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 381 / 3e-130 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 372 / 7e-127 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 369 / 2e-125 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 357 / 3e-121 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G263000 [exp] 355 / 1e-119 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 352 / 4e-119 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 350 / 8e-118 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G053800 [exp] 336 / 1e-112 AT3G24040 505 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010887 [exp] 613 / 0 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10012710 [exp] 602 / 0 AT1G71070 561 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 385 / 5e-132 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 385 / 7e-132 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10023687 [exp] 364 / 2e-123 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10011765 [exp] 362 / 6e-123 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 352 / 6e-119 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 349 / 6e-118 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 346 / 3e-116 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 338 / 2e-113 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.008G128000.1 pacid=42807958 polypeptide=Potri.008G128000.1.p locus=Potri.008G128000 ID=Potri.008G128000.1.v4.1 annot-version=v4.1 ATGGGAGCAGAGAAAAGATGGCTTTTCACTCTCTTCTCTTCAGCATTTCTTTCACTACTCTTTCTCTTAGTATATTCAATCTCTGCTTTCAGCTCCTCTA AACAGTTTCCTTCTATAATTCATCATGGAACCCACTACCCTCCTGCTTTTGCCTATTATATATCAGGCGGCAGAGGGGATAAGGACCGGATCCTTAGGCT ATTGCTCGCGGTTTATCACCCAAGAAACCGTTATTTATTGCATTTGGGTGCTGAAGCATCAGATGAGGAGAGAATGAGGCTTGTTGGGGCTGTAAATGCA GTGCCTGCAATTAGGAGTTTTGGGAATGTGGATGTTATAGGGATGCCCAGTAGGCTTACCTATATGGGTTCTTCTAATCTGGCTGCAATGTTGCGTGCTG CTGCCATTTTGTTGAGAATGGATGCAGGTTGGACTTGGTTTGTGTCTTTGAGTGCAATGGATTATCCGCTGATTACTCAGGATGACTTGGCTCATGTGTT CTCCTGTGTCAGCAGAGACCTCAGTTTCATAGATCACACCAGTGAACTTGGGTGGAAAGAATCTCAGAGAATTCAGCCTATTGTAGTTGACCCCGGAATT TACTTAGCCAGGAGGAGCCAGATATTTCACGCTACAGAGAAGCGGCCAACTCCTGATGGTTTCAAATTATTTACAGGTTCCCCATGGGTCATCCTGAGCA GACCATTTCTTGAATTTTGTATTCTTGGTTGGGATAATCTTCCTCGAACCCTTCTTATGTACTTCAACAATGTGGTCTTATCTGAAGAAAGCTATTTTCA CTCTGTCATTTGCAATGCACCAGAGTTTAAGAATACAACTGTAAACAGTGATCTAAGGTATATGGTCTGGGACAATCCTCCGAAGATGGAACCGCATTTT CTCAATACATCTGATTACGATCTGATGATTCAAAGTGGAGTGGCTTTTGCAAGGCAGTTTCAGAGGGATGACCCTGTGCTAGACAAGGTTGATGAGAAGA TCCTTAAGCGTGGGCACAAGCGAGCTGCCCCAGGTGCATGGTGCACCGGCCGTAGAACCTGGTGGATGGATCCTTGCTCCCAGTGGGGTGACGTCAATGT TGTGAAGCCTGGTCCTCAGGCTAAGAAATTTGAGGAGACCATTAAAAACCTTCTTGATGAATGGAACTCTCAGATGAATCAGTGCAAGTGA
AA sequence Show only first row Show all	>Potri.008G128000.1 pacid=42807958 polypeptide=Potri.008G128000.1.p locus=Potri.008G128000 ID=Potri.008G128000.1.v4.1 annot-version=v4.1 MGAEKRWLFTLFSSAFLSLLFLLVYSISAFSSSKQFPSIIHHGTHYPPAFAYYISGGRGDKDRILRLLLAVYHPRNRYLLHLGAEASDEERMRLVGAVNA VPAIRSFGNVDVIGMPSRLTYMGSSNLAAMLRAAAILLRMDAGWTWFVSLSAMDYPLITQDDLAHVFSCVSRDLSFIDHTSELGWKESQRIQPIVVDPGI YLARRSQIFHATEKRPTPDGFKLFTGSPWVILSRPFLEFCILGWDNLPRTLLMYFNNVVLSEESYFHSVICNAPEFKNTTVNSDLRYMVWDNPPKMEPHF LNTSDYDLMIQSGVAFARQFQRDDPVLDKVDEKILKRGHKRAAPGAWCTGRRTWWMDPCSQWGDVNVVKPGPQAKKFEETIKNLLDEWNSQMNQCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G128000 [exp]	0	1
AT3G18060			transducin family protein / WD...		Potri.015G041200 [exp]	1.00	0.9369
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	5.19	0.9078	Pt-DET3.1
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	7.93	0.9059	Pt-TTN1.1
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	9.05	0.9251
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	9.74	0.9068
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.001G090600 [exp]	10.39	0.9074	ADL1.1
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	18.13	0.9063
AT1G43580			Sphingomyelin synthetase famil...		Potri.005G193300 [exp]	19.44	0.8731
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	20.61	0.9004
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.008G147800 [exp]	21.07	0.8345

Compare expression of checked genes

Potri.008G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.