Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40940 175 / 4e-51 FLA20 putative fasciclin-like arabinogalactan protein 20 (.1) AT5G06920 62 / 1e-10 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor (.1) AT1G15190 54 / 5e-08 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127500 [exp] 253 / 6e-83 AT5G40940 106 / 7e-26 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.017G111600 [exp] 200 / 2e-61 AT5G40940 216 / 2e-66 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.005G079500 [exp] 72 / 9e-14 AT5G06920 63 / 1e-10 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.013G152200 [exp] 57 / 7e-09 AT5G06920 296 / 1e-98 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020296 [exp] 82 / 4e-17 AT5G06920 192 / 2e-57 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10019675 [exp] 72 / 1e-13 AT5G06920 71 / 4e-13 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10018505 [exp] 71 / 2e-13 AT5G06920 200 / 6e-61 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10039717 [exp] 68 / 2e-12 AT5G06920 192 / 5e-58 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10016437 [exp] 63 / 1e-10 AT5G06920 68 / 3e-12 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.008G128200.1 pacid=42808323 polypeptide=Potri.008G128200.1.p locus=Potri.008G128200 ID=Potri.008G128200.1.v4.1 annot-version=v4.1 ATGGCGACCCAATTTCTCATGTCCATCATTCTCCTTTCTCTCCTCATTTCTTTCTCATCTTCTCTCCCTATATACAGCATACTTGATGCCACCCAAATCC TCTCAAATTCAGGCTATGTAGCCATGGCTCTCATTCTTGAATTTGGCTCTCAAACTGATCTAATCCCACCATCTCAATCTCTCACTATCTTCTCTCCCTC TGATACTGCATTTTCTCTTTCAGGCCAACCGTCTCTTGATCTCCTTCATTTCCACTTCACCCCTCGGTCTTTCTCTCTAAACTCCCTCAAATCCCTCCCT CCTGGATACCAAATCCCCACTCTTTTCTCCAATCACTCCCTCGTCATCAGTTCTAATGCTGATAGTCAAACCTCGGTAAATGGTGTCAAGATTAATGGGT CGGCTTTATATGATGATGGGTTTCTAGTAATCTTTGGTGTTGACAATTTTCTTGATCCGGATTTTACGGTTTCTGGGTCCATTAATGGGAGTACTGGTGG AATTCGTGGATGCTATGTTACATCTGGTGACGATGATTGCTCATTTGAGGAGGCTAGTGGGGTTTTGAAATCAAGAGGGTATTCTGTTATGGCCTCGTTT CTTGATTTGCAATTGGCGAAGTTTAAGGACCATACCAGGTTAACAATCTTGGCTCCTGTTGATGAAGTTGTGAAAGGTTTTATGGGTGATTTTAGTGATT ACCGTTCAATCTTTCTTAGGCATGTCGTGCCTTGCAAGATTTCATGGAGGGATTTGGTTAGTCTTGATGATGGGGTGGTGTTACCTACATATTTGAGGGG GTTCAAAATAAATGTAACTGTATCTAGTACTTTCTTGATGTTCAATGGAGTTCAGGTCATTGTTCCTGAAATTTATAGCAATAGTTGGCTTACTGTTCAT GGTCTTGGGGGGAGTTTAGTGATGCAAGAACCGACTGCAACTGCAAGCAATGCTGAAAAGATTGTAGTGGATTTTAAGGCCATAAAGGTCTTGATAGCCT TTTCTTTTCTGCTTCTGTGTACCTCTCAGCTGAACTCTATTTTGTAA
AA sequence Show only first row Show all	>Potri.008G128200.1 pacid=42808323 polypeptide=Potri.008G128200.1.p locus=Potri.008G128200 ID=Potri.008G128200.1.v4.1 annot-version=v4.1 MATQFLMSIILLSLLISFSSSLPIYSILDATQILSNSGYVAMALILEFGSQTDLIPPSQSLTIFSPSDTAFSLSGQPSLDLLHFHFTPRSFSLNSLKSLP PGYQIPTLFSNHSLVISSNADSQTSVNGVKINGSALYDDGFLVIFGVDNFLDPDFTVSGSINGSTGGIRGCYVTSGDDDCSFEEASGVLKSRGYSVMASF LDLQLAKFKDHTRLTILAPVDEVVKGFMGDFSDYRSIFLRHVVPCKISWRDLVSLDDGVVLPTYLRGFKINVTVSSTFLMFNGVQVIVPEIYSNSWLTVH GLGGSLVMQEPTATASNAEKIVVDFKAIKVLIAFSFLLLCTSQLNSIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40940		FLA20	putative fasciclin-like arabin...		Potri.008G128200 [exp]	0	1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.014G094800 [exp]	13.82	0.8800	AGP20.1
AT4G35930			F-box family protein (.1)		Potri.005G110200 [exp]	17.49	0.8628
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.005G166300 [exp]	20.97	0.8394
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.001G245300 [exp]	26.83	0.8584	SMO2.1
AT5G01910			unknown protein		Potri.016G138300 [exp]	27.76	0.8609
AT2G26520			unknown protein		Potri.014G035400 [exp]	29.51	0.8467
AT2G33793			unknown protein		Potri.004G042800 [exp]	34.71	0.8577
AT3G16850			Pectin lyase-like superfamily ...		Potri.010G005500 [exp]	43.26	0.8382
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	48.41	0.8538	Pt-ACT2.4
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	52.24	0.8174

Compare expression of checked genes

Potri.008G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.