Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23030 697 / 0 PUB11 ARM repeat superfamily protein (.1) AT1G71020 689 / 0 ARM repeat superfamily protein (.1.2) AT3G46510 446 / 4e-149 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 421 / 2e-139 ATPUB14 plant U-box 14 (.1) AT2G28830 403 / 6e-129 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 335 / 3e-106 PUB15 Plant U-Box 15 (.1) AT1G29340 243 / 1e-70 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G07360 230 / 2e-68 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT3G01400 216 / 3e-64 ARM repeat superfamily protein (.1) AT5G58680 211 / 3e-62 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G113900 [exp] 1077 / 0 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 441 / 5e-147 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 439 / 1e-146 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 437 / 4e-146 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 431 / 7e-143 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 410 / 6e-135 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 378 / 1e-122 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 364 / 2e-117 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.019G029500 [exp] 261 / 2e-80 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043471 [exp] 751 / 0 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 715 / 0 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10037970 [exp] 434 / 9e-145 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10040834 [exp] 429 / 4e-142 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 423 / 6e-140 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 355 / 9e-114 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 351 / 5e-112 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10007511 [exp] 302 / 4e-93 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 288 / 3e-88 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10038699 [exp] 273 / 1e-83 AT3G54850 599 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.008G128600.1 pacid=42806392 polypeptide=Potri.008G128600.1.p locus=Potri.008G128600 ID=Potri.008G128600.1.v4.1 annot-version=v4.1 ATGGCCGGCGGAGAGGACACCCTGGTCACGGCGACATTCCTTCTCGACCTCGTCCGTCAGATTTGCTCTGTGGGGATATCCGTTGCCGGCGATAAGAATA AAAACGACAGCGTTTTTAGAAAGGATTGCATGGATCTGGTGCGCAGGGTCTCACTGTTGACACATTTTCTCGAAGAGATAAATGGACAGCTAGGGAAACT GGATGCATTGGGTTCTTCTTCCTCTTCGTCAAAGGAAATGAATTGGTGGTCTGATCTGGTCGCTGCTCTCCAGTCTGCTCACAATCTCGTATCGCTTGCT GGGTCTTTTCAATCCACTAATAATTCTGATGGAACTGCCAAGAAAATTGTCACCCTTTTTCATGGCGTGACATGGAAACTGGAGAAGTCTTTGGCTAATG TACCATACGATCAATTTGACATATCAGAGGAAGTGCAGGAGCAGGTTGCATTGGTGAGAGCTCAGTTGCGAAGAGCCACGGAAAGATATGGGTCTATGAA TTCAAGGGAGGTGTCTTTTCCCTTTTCCCAGCAGATTGACAAAGATGTCGATCAGGCACAAAAGGGCAATAGGTTAACGGGAAGTTGTCATGTTGAGAAT AGTGGCAGTGTCAATCATAAAGTTGCAGAAAACATTGAGACTTCTGTTTCAGGAAGCAATGGCTCAACAGACCGCACTGCAGATCTGGTGGCCAGTGAAT CGAATGCTGTTGATTTGGCCAAGAAATATTCTTTGCCTAACAAGCGCACTGAAGACTTAAAGAAGCCCGACACACTTAAAATCCCTCATGATTTTCTGTG CCCCATATCTTTGGAACTAATGAGGGATCCTGTTATTGTAGCTACAGGCCAGACATATGAAAGGTCTTACATACAGAGATGGATAGATACTGACAACTCA ACATGTCCAAAAACTCAGCAGAAGCTTGAACATTTGACACTGACCCCAAATTATGTCCTAAGAAGTCTAATAACTCAGTGGTGTACAGAGCACAAGGTTG AGCAACCAACAGGGTTAGCAAATGGAAGGATAAAAAAGAGTGATGGATCTTTCCGTGTTGTTAGTGGGGACATAGCAGCCATCCAGGCAACTGTCCGCAG GCTCTCAAGCCGTTCTATTGAGGAGCGTAGAGCTGCTGTCTCTGAAATCCGATCATTGTCTAAAAGAAGCACAGATAACAGGATACTAGTAGCAGGAGCA GGAGCTATTCCTGTTCTTGTCAACCTTTTAACATCTGAAGATACGTCAATACAAGAAAACGCTGTTACTTCAATCCTTAACCTTTCTATATATGAAGATA ACAAGGGACTGATAATGCTTGCTGGTGCGGTTCCTTCAATCGTCCAAGTTCTCAGAGCTGGGAGTGTGGAAGCAAGAGAGAATGCTGCCGCAACCCTTTT CAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGTGCATCAGGAGCAATACCAGCTTTGGTAGAATTGCTCGAAAATGGAAGCACAAGAGGAAAG AAAGATGCTGCAACGGCCTTGTTCAATCTTTGCATTTATCTGGGGAACAAGGGAAGGGCCGTCAGGGCAGGGATCATTACAGCCTTATTAAAGATGCTTA CAGACTCCAGAAACCGTATGATTGATGAGGGTCTGACCATTCTTTCAGTTCTAGCTAGCAACCAAGAAGCAAAGGTTGCTATAGTAAAAGCCAGCACCAT ACCTGTTCTGATAGATTTGTTGAGAACAGGAATGCCACGCAACAAAGAGAATGCAGCAGCCATTTTGCTCTCCTTGTGCAAGAGAGATCCTGAGAATCTT GCATGTGTAAGTAGACTGGGTGCTGTCATACCTTTGACAGAACTTGCTAAAGGTGGCACGGAGAGGGCGAAACGAAAGGCTACATCGATGTTGGAACATC TTCGGAGGCTACAACAGCACTGA
AA sequence Show only first row Show all	>Potri.008G128600.1 pacid=42806392 polypeptide=Potri.008G128600.1.p locus=Potri.008G128600 ID=Potri.008G128600.1.v4.1 annot-version=v4.1 MAGGEDTLVTATFLLDLVRQICSVGISVAGDKNKNDSVFRKDCMDLVRRVSLLTHFLEEINGQLGKLDALGSSSSSSKEMNWWSDLVAALQSAHNLVSLA GSFQSTNNSDGTAKKIVTLFHGVTWKLEKSLANVPYDQFDISEEVQEQVALVRAQLRRATERYGSMNSREVSFPFSQQIDKDVDQAQKGNRLTGSCHVEN SGSVNHKVAENIETSVSGSNGSTDRTADLVASESNAVDLAKKYSLPNKRTEDLKKPDTLKIPHDFLCPISLELMRDPVIVATGQTYERSYIQRWIDTDNS TCPKTQQKLEHLTLTPNYVLRSLITQWCTEHKVEQPTGLANGRIKKSDGSFRVVSGDIAAIQATVRRLSSRSIEERRAAVSEIRSLSKRSTDNRILVAGA GAIPVLVNLLTSEDTSIQENAVTSILNLSIYEDNKGLIMLAGAVPSIVQVLRAGSVEARENAAATLFSLSLADENKIIIGASGAIPALVELLENGSTRGK KDAATALFNLCIYLGNKGRAVRAGIITALLKMLTDSRNRMIDEGLTILSVLASNQEAKVAIVKASTIPVLIDLLRTGMPRNKENAAAILLSLCKRDPENL ACVSRLGAVIPLTELAKGGTERAKRKATSMLEHLRRLQQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.008G128600 [exp]	0	1
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	1.73	0.9599
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.019G130000 [exp]	5.47	0.9499
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	6.92	0.9542
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	7.00	0.9493
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.010G044700 [exp]	7.54	0.9522
AT5G64970			Mitochondrial substrate carrie...		Potri.007G093300 [exp]	7.74	0.9226
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.016G065700 [exp]	8.48	0.9374	CPK20,CPK20.2
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	9.59	0.9514
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	10.72	0.9510
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.005G199100 [exp]	10.81	0.9312	Pt-KDSA.2

Compare expression of checked genes

Potri.008G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.