Plant FIBer expression Database

Potri.008G128700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01340 206 / 3e-67 At17.1 unknown protein
AT1G71015 192 / 7e-62 unknown protein
AT5G37840 161 / 1e-49 unknown protein
AT1G66480 160 / 3e-49 PMI2 plastid movement impaired 2 (.1)
AT3G61920 42 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G113800
[exp]
424 / 5e-153 AT2G01340 207 / 1e-67 unknown protein
Potri.017G128800
[exp]
230 / 1e-76 AT1G66480 192 / 8e-62 plastid movement impaired 2 (.1)
Potri.004G088200
[exp]
228 / 1e-75 AT2G01340 179 / 1e-56 unknown protein
Potri.011G153000
[exp]
49 / 7e-07 AT1G64700 160 / 1e-49 unknown protein
Potri.001G448500
[exp]
43 / 6e-05 AT1G64700 154 / 3e-47 unknown protein
Potri.016G128800
[exp]
41 / 0.0002 AT3G03280 52 / 1e-08 unknown protein
Potri.006G105500
[exp]
40 / 0.0003 AT3G03280 65 / 2e-13 unknown protein
Potri.016G079700
[exp]
40 / 0.0004 AT3G10120 114 / 1e-32 unknown protein
Potri.006G213100
[exp]
40 / 0.0005 AT3G10120 122 / 9e-36 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036005
[exp]
205 / 3e-66 AT2G01340 174 / 2e-54 unknown protein
Lus10016709
[exp]
164 / 7e-51 AT2G01340 147 / 7e-45 unknown protein
Lus10043472
[exp]
146 / 9e-44 AT5G37840 134 / 2e-39 unknown protein
Lus10009120
[exp]
145 / 3e-42 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14009 DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence
>Potri.008G128700.1 pacid=42805905 polypeptide=Potri.008G128700.1.p locus=Potri.008G128700 ID=Potri.008G128700.1.v4.1 annot-version=v4.1
ATGGGCAACACTTTAGGTGGGAAAAAGACTGCAAAAGTCATGAAGATAAATGGTGAAACATTCAAGTTCAAGACACCGGTGAAGGCCGGGGATGTAGTTA
AGGACTATCCAGGGCATGTTTTGCTAGAATCAGAGGCAGTTAAGCATTATGGTATTAGGGCAAAGCCATTGGAAGCACACCAAGATTTGGTGCCAAAAAG
GCTCTACTTCCTAGTAGAGTTGCCAGAGACTCCAACTGAGAGGGTTCCAAGAAGGGTTCGTTCGGGGATTAACATGAGTGCTAAAGACAGGCTCGAGAGC
CTAATGCTCTCTAGGAGATCAACATCTGATCTTTCGATAATGAAACCTTCTAGCATTGTGTCCGAGGAGGCAAAACGTGGTGCAATGAGGGTGAAAATGA
GATTACCAAAGGAACAAGTGGAGAAGTTGATGCAAGAAAGTAAGGATGAGGCTGAGGCGGCTGCTAAGATTCTGGATCTTTGCATGGCAAACACTGCAGG
TGGTAGCAATAATAGCTCTCGTGAAATTGCACAAAATGGTCAAGAGAGTGGGTTGTCGCAACAAGTTCATTGGAAGAGTGGCGGCCACGGGAGAGTCGGC
AACCAAGGGATCATCAAGGCACGTGAGAAGCGAGTGAGTTTCCTTCCTTTCAGCGAAGGAGAGATGCAGATAGCTGTGGCTTCTTATTAG
AA sequence
>Potri.008G128700.1 pacid=42805905 polypeptide=Potri.008G128700.1.p locus=Potri.008G128700 ID=Potri.008G128700.1.v4.1 annot-version=v4.1
MGNTLGGKKTAKVMKINGETFKFKTPVKAGDVVKDYPGHVLLESEAVKHYGIRAKPLEAHQDLVPKRLYFLVELPETPTERVPRRVRSGINMSAKDRLES
LMLSRRSTSDLSIMKPSSIVSEEAKRGAMRVKMRLPKEQVEKLMQESKDEAEAAAKILDLCMANTAGGSNNSSREIAQNGQESGLSQQVHWKSGGHGRVG
NQGIIKAREKRVSFLPFSEGEMQIAVASY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01340 At17.1 unknown protein Potri.008G128700
[exp]
0 1
AT4G23050 PAS domain-containing protein ... Potri.001G108900
[exp]
10.09 0.9146
AT1G15950 IRX4, ATCCR1, C... IRREGULAR XYLEM 4, cinnamoyl c... Potri.001G045600
[exp]
15.68 0.9091
Potri.001G045901
[exp]
15.87 0.9060
AT5G25880 ATNADP-ME3 Arabidopsis thaliana NADP-mali... Potri.006G236500
[exp]
23.32 0.9028
AT1G30760 FAD-binding Berberine family p... Potri.011G159600
[exp]
25.98 0.9013
Potri.009G093600
[exp]
26.72 0.8834
AT3G12360 ITN1 INCREASED TOLERANCE TO NACL, A... Potri.006G214500
[exp]
28.87 0.9012
AT2G27660 Cysteine/Histidine-rich C1 dom... Potri.001G229500
[exp]
28.98 0.8800
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Potri.001G355200
[exp]
30.03 0.8981
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.018G149300
[exp]
31.01 0.8797 CYP716.1

Potri.008G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.