Potri.008G128800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71010 1713 / 0 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
AT4G33240 1191 / 0 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
AT3G14270 833 / 0 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
AT1G34260 418 / 2e-121 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
AT1G10900 85 / 3e-16 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
AT1G60890 81 / 5e-15 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
AT5G26360 78 / 3e-14 TCP-1/cpn60 chaperonin family protein (.1)
AT1G77740 73 / 1e-12 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1)
AT3G09920 72 / 3e-12 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
AT1G21980 71 / 9e-12 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G113700 2865 / 0 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Potri.003G072300 1238 / 0 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Potri.001G163200 526 / 9e-157 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Potri.019G087000 454 / 2e-132 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Potri.013G116400 444 / 4e-129 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Potri.003G019100 89 / 2e-17 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Potri.T046300 85 / 2e-16 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Potri.018G138200 84 / 4e-16 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Potri.001G211200 81 / 4e-15 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035998 2011 / 0 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Lus10016702 1952 / 0 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Lus10038127 483 / 3e-143 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10005176 483 / 4e-143 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10038129 481 / 4e-142 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Lus10005173 481 / 2e-141 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10028710 426 / 4e-124 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Lus10006051 358 / 5e-101 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Lus10040514 81 / 6e-15 AT5G26360 996 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Lus10034682 81 / 6e-15 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF01504 PIP5K Phosphatidylinositol-4-phosphate 5-Kinase
Representative CDS sequence
>Potri.008G128800.3 pacid=42807934 polypeptide=Potri.008G128800.3.p locus=Potri.008G128800 ID=Potri.008G128800.3.v4.1 annot-version=v4.1
ATGTGTAGTGAGTGTCATTCAAACAATAACCAGTTTTTTAATGGATACCATTGCCAAAGTTGTGGCAAGTGGTTGTGTTTCAATTGTATGAGAGGTTACC
AATCAAATGGTGATTTTGGGGAGGCTATCAAATCTTGCAAGTTCTGTAATGGGGTTACTGTGAAACGTGATGGTGGAAGGAAGAATAGTGATAAAGTACA
CCCTACTGACTCTCCTAGAGGTAGCCCTGAGCCACCATCACCTTCTTTTAGTGCCGAGCCAATCCATAGTGATCGTCTTCCCCTTTATCTTGAATCCAGG
GATTGTGGGTTTTCTCCTAATGCAATAACCACCAGGAGTATGACTTCTTTTAGTGCTCACCCGTCTCCTGTTTCTGTTCGTCGCTCATCAAGCAGGAGTG
ATGAAGAAGAAGCAGAGGATTCTGGGAAACTCCTTTACAGCCCATCGAGTGAGTACTGTCATGATATTTCAGATATAGATTCAAGTAGTGTTAGTGCTAG
GCTTGAGTTTTACAATTGTAAGACGGTGGGATCAAGTCCTTTAGACAGCCCTTCTCGGATTGATTTTAGTTCTTGCAGAGTTGGGCATACTGTACAGCAG
GGGCGAGAAGGAAGCCCATTGTCTCAAAGTGATGGTCCCTTTGATCAAGAAAATATGGCTATTTTAAGCAGGCCTGACAAAAGGACTGAGGATCCAGAGA
ATACTGATGATTGCTCTGATGACGGGTCAGTTTTGAGGGATCAATATCACAAGTCTCCAAAACCATTGGATTTTGAAAGCAATGGCCTTATCTGGTTTCC
CCCACCTCCTGAGGATGAAAATGATGAGGAGGAGAGTAATTTCTTCACATATGATGATGAAGATGATGATATTGGGGACTCTTCTGCAATTTTCTCATCG
AGTAGTAGCCTCTCTAGCACATTTCCATCAAAGGAGAAACAGAATAAGATTAACAAGGACCCTACTAAAGCTATGATACAGGGGCATTTTAGGGCTCTTG
TGGCGCAGCTTTTACAGGGAGAGGGTATCAAAGCCAGCAAGGATGAAAACAATGGAGAATGGCTTGACATAGTCACAGCAATTGCATGGCAAGCTGCAGC
TTTTGTGAAACCAGATACCAGCAGAGGAGGTAGTATGGATCCGGTTGATTATGTAAAGGTTAAATGTATAGCATCAGGAAATCCAAGAGATAGCACCCTT
GTAAAGGGAGTAGTTTGTACAAAAAATATAAAGCACAAGCGCATGACCACACAATACAAAAATCCCAGATTACTTCTTTTAGGAGGAGCACTCGAATATC
AGAGCGTTGTGAATCAGTTGGCTTCTTTTAATACATTAGTGCAACAGGAAAATGATCATCTCAAGCTGATCATGTCGAAGATAGAGGCTCTTCGCCCAAA
CGTTCTGCTGGTTGAGAAAAGCGTATCTCCATATGCCCAAGAATATCTACTGGGAAAGGAAATTTCCTTGGTGCTGAATGTAAAAAAGCCTTTACTGGAA
CGTATAGCTCGGTGCACAGGTGCTCAGATTAGTCCATCGTTTGAGAATATTTCTACAACACGACTGGGACATTGTGAACTATTCAGGGTAGAGAGAGTGA
GTGAAGAACATGAGACAAGCAATCAGTTCAACAAAAAGCCATCTAAAACATTGATGTCTTTTGAAGGGTGTCCAAGGCGTTTAGGTTGCACGGTCCTTCT
GAGGGGCACATGTCGTGAAAAGCTAAAGAAGGTCAAGCATGTTATTCAATATGCAGTTTTTGCAGCCTATCACTTGTCCCTTGAGACTTCTTTCCTTGCC
GATGAGGGTGCAAGTCTTCCTAAGATGACAATTAGACCCTCAATTGCTATTCCTGAGAGAACAGCAGCAGATAATTCCATTTCAGTTATCCCTCCAATGA
TTTGCCATGCTGAAGTTGCTTTGTCTGCTCAGGATGATGGATCACTGGGTCTTAAACCAGAGCATGAAGGATCAGAATCATTGACGGGGAACCTTGATGC
TGGTGTCATTCATCCTTTATCTCCATGTTCCGTCACTTGTAGGTCTGGAAATGAATTCTCTATTGCATGCCATGGCGATTTAGTGTCTAATGCGGGGGGA
TTGGATGCATTTTCTGCAAGTCAATGTGAGGGTCTAAAGATGTTTGCTGTTTCCCCTGGTATCAAAAATCTTTCACAGCCAGAACTACAAGATATCATGG
CTGAAGAAGAGGGACAACTTTTGGCGACTCATGAATCAGTACAATCTGAGAAGATTGATGAAGATGAGGTTTCCAGTGAATATTTCTCAGTCACTGACAC
ATACCAGAGCATATTAGTATCATTTTCAAGTCGCTGTGTGCTGAAAGGAACTGTATGCGAACGCTCTCGGCTTCTGCGCATAAAATTCTATGGAAATTTT
GATAAGCCACTTGGAAGATATCTTCGTGATGATCTGTTTGATCAGAAATCATGCTGTAGGTCATGTAAGGAGCCAGCCGAAGCACATGTTCTGTGTTTCA
CTCATCAGCAGGGTAATCTTACAATCAATGTTAGATCCCTTTCCTCTGTAAAACTACCTGGAGATCGTGATGGTAAGATATGGATGTGGCACCGATGCCT
AAGATGTGCTCATATAGATGGAGTTCCACCAGCAACTCGTAGAGTTGTCATGTCAGATGCTGCCTGGGGACTTTCTTTTGGGAAGTTTTTGGAACTGAGC
TTTTCAAACCATGCAACTGCCAATCGTGTTGCACCCTGTGGTCATTCATTGCAGAGGGACTGTCTTAGATTCTATGGGTTTGGGAGCATGGTTGTGTTCT
TCCGGTATTCCCCTATTGATATTCTCAATGTCCATTTACCGCCATCAATGCTTGAATTCAACGGCATTGTTCAGCAAGAGTGGACAAGGAAAGAGGCAGC
AGAGCTCTTGGGAAAAATGGAAACCTTCTATGGTGAGATATTTGGTGTGCTTGACAGCATGGAACAGAGAAGTAAATATTTTGGAAGTGAATTGTCAGAT
ACCAATGAGTTACAGAATCGCATCATGGAGCTGAAAGATCAACTCGTAAAGGAAAAAAACAATTACAGTGGCATATTACAACTGGCAGTTATGGAGAGTT
TACAGTTGGATCAAACAGCCATGGACATTCTAGAACTCAATCGCTTAAGACGTACTCTTCTAATTGGTTCTCATGTTTGGTATCGGAAGCTTTATTCACT
GGACTGTCTCCTTAAGACAAACTATCTTGTCAAGGCTAAAGAAGGGGATGTGTCTTATACTGAGCTGAAAGATTTGAAGAACGATATATTTTGCAAGGAT
AGCAAGCTTGACCATGATCATGAAGAAAATATCTCTGGCTATTCAAAATCACAGGAACATGTAGGGAATGATTTTCAGTCAGAGAAGAAAGAAACAGGTC
TGTCCTTCGAACATTGTGTTCTTGAACATTCAATGTTGCCATCATGTTATCATAACACAGAGGATGAAGTGCATGCAGGTGAGGAAACCGCGAGTAAGAC
ATTATTTAGTGACAACCCTTCCCATGCTTCCAATCTGTCTGACAGAATTGATTCTGCATGGACGGGTACCGATCAACTTCCAATTAAAGTTCAACCTCCG
CATGCATCTCAGGCAGAGGCAGATGGATTCCAACCTGTGTCTGTCAGGCAGCCAAATTTGTTTGATAATCCTCCTTTTCGAAGGATGGTGGCACCAAAGA
GAGTTCATTCTTTTGATTCTGCATTGAGAGCCCAAGAAAGAATCCAGAAAGGGTTGCCTCCATTGCATTTGTCGACTATCAGATCATTCCATGCATCTGG
AGATTACAGGAGTATGGTGAGAGATCCTGTTTCAAATGCAATGAGGACTTATTCCCAGACATTGCCACTGGAGGCACATAAGTTGAATTTAATGCACAGT
TCCACACACTCATTTATCTCCTCCGCAGCTAATATGGCTGGAGGAGCTCGGTTATTGTTACCAGTGAGGGCCAACAGTGACTTAGTTATAGGCGTGTATG
ACAACGATCCTGCAAGTGTAGTTTCCTATGCCCTCAGTTCTAAGGAACATGAGGATTGGGTTACTGATAGGTCAAATGAGAGTGCAGGAATCTGGAGTAC
AATTAAGCACAGTAAAGAAGATTCTGCAGCTTCCTCTTTTACATCCTGGCAGTCTTTAGATTCCATGGACCTAGATTATATGAGCTATGGAAGTTATGGG
TCTGAAGATCCTTTTTCAACCTTGGGCACCTTGTTTATGGATTCAAAAAAATCTCCACACTTGACAATTTCTTATGAAGATGCTTCTTCAATTGCTGAAG
GCAAAGTGAGGTTTTCTGTTACTTGTTATTTTGCGAAGCAGTTTGACTTTCTTAGGAAGAAATGCTGCCCTAGTGATGTTGATTTTGTTCGTTCACTGAG
TCGCTGCCAGAAGTGGAGTGCACAAGGAGGAAAAAGCAATGTATACTTTGCCAAGTCATTGGATGAGAGATTCATCATAAAACAAGTAAAAAAGACTGAG
TTGGAGTCCTTCGAGAAATTTGCCCCAGAATATTTCAAGTATCTGATTGATTCTCTCAACTCAAGGAGCCCCACTTGCTTGGCAAAAATTCTTGGTATTT
ATCAGGTTACTGTAAAGCATTTGAGAGGTGTCAAGGAAACAAAAATGGATTTGATGGTGATGGAAAACCTCTTTTTTAACAGAAATATTGGGAGAGTCTA
CGACCTTAAGGGCTCTTCTCGATCCCGCTACAATACTGACACATCTGGGTCTAACAAGGTGTTACTAGATACGAATCTAGTGGAAAGACTGCGTACAGAG
CCCATATTTCTTGGAAGTAAGGCGAAGAGAAGCCTTGAGAGAGCTATATGGAATGATACGTCATTTTTAGCATCTGTTGATGTTATGGACTACTCTTTGC
TCGTTGGAGTGGATGATGAGCGGAAGGAGCTGGTTTTGGGGATCATTGATTTCATGAGACAGTATACATGGGACAAGCATTTAGAGACGTGGGTTAAGTC
ATCTGGAATACTTGGCGGTCCGAAAAATGCTTCCCCAACAATTGTTTCTCCAAAACAATACAAGAAAAGATTCCGAAAAGCAATGACTTCATACTTTCTT
ACTGTACCTGATCAATGGTCTTCACGGACTGAATCACTGCATTCTTGTCATTCATAA
AA sequence
>Potri.008G128800.3 pacid=42807934 polypeptide=Potri.008G128800.3.p locus=Potri.008G128800 ID=Potri.008G128800.3.v4.1 annot-version=v4.1
MCSECHSNNNQFFNGYHCQSCGKWLCFNCMRGYQSNGDFGEAIKSCKFCNGVTVKRDGGRKNSDKVHPTDSPRGSPEPPSPSFSAEPIHSDRLPLYLESR
DCGFSPNAITTRSMTSFSAHPSPVSVRRSSSRSDEEEAEDSGKLLYSPSSEYCHDISDIDSSSVSARLEFYNCKTVGSSPLDSPSRIDFSSCRVGHTVQQ
GREGSPLSQSDGPFDQENMAILSRPDKRTEDPENTDDCSDDGSVLRDQYHKSPKPLDFESNGLIWFPPPPEDENDEEESNFFTYDDEDDDIGDSSAIFSS
SSSLSSTFPSKEKQNKINKDPTKAMIQGHFRALVAQLLQGEGIKASKDENNGEWLDIVTAIAWQAAAFVKPDTSRGGSMDPVDYVKVKCIASGNPRDSTL
VKGVVCTKNIKHKRMTTQYKNPRLLLLGGALEYQSVVNQLASFNTLVQQENDHLKLIMSKIEALRPNVLLVEKSVSPYAQEYLLGKEISLVLNVKKPLLE
RIARCTGAQISPSFENISTTRLGHCELFRVERVSEEHETSNQFNKKPSKTLMSFEGCPRRLGCTVLLRGTCREKLKKVKHVIQYAVFAAYHLSLETSFLA
DEGASLPKMTIRPSIAIPERTAADNSISVIPPMICHAEVALSAQDDGSLGLKPEHEGSESLTGNLDAGVIHPLSPCSVTCRSGNEFSIACHGDLVSNAGG
LDAFSASQCEGLKMFAVSPGIKNLSQPELQDIMAEEEGQLLATHESVQSEKIDEDEVSSEYFSVTDTYQSILVSFSSRCVLKGTVCERSRLLRIKFYGNF
DKPLGRYLRDDLFDQKSCCRSCKEPAEAHVLCFTHQQGNLTINVRSLSSVKLPGDRDGKIWMWHRCLRCAHIDGVPPATRRVVMSDAAWGLSFGKFLELS
FSNHATANRVAPCGHSLQRDCLRFYGFGSMVVFFRYSPIDILNVHLPPSMLEFNGIVQQEWTRKEAAELLGKMETFYGEIFGVLDSMEQRSKYFGSELSD
TNELQNRIMELKDQLVKEKNNYSGILQLAVMESLQLDQTAMDILELNRLRRTLLIGSHVWYRKLYSLDCLLKTNYLVKAKEGDVSYTELKDLKNDIFCKD
SKLDHDHEENISGYSKSQEHVGNDFQSEKKETGLSFEHCVLEHSMLPSCYHNTEDEVHAGEETASKTLFSDNPSHASNLSDRIDSAWTGTDQLPIKVQPP
HASQAEADGFQPVSVRQPNLFDNPPFRRMVAPKRVHSFDSALRAQERIQKGLPPLHLSTIRSFHASGDYRSMVRDPVSNAMRTYSQTLPLEAHKLNLMHS
STHSFISSAANMAGGARLLLPVRANSDLVIGVYDNDPASVVSYALSSKEHEDWVTDRSNESAGIWSTIKHSKEDSAASSFTSWQSLDSMDLDYMSYGSYG
SEDPFSTLGTLFMDSKKSPHLTISYEDASSIAEGKVRFSVTCYFAKQFDFLRKKCCPSDVDFVRSLSRCQKWSAQGGKSNVYFAKSLDERFIIKQVKKTE
LESFEKFAPEYFKYLIDSLNSRSPTCLAKILGIYQVTVKHLRGVKETKMDLMVMENLFFNRNIGRVYDLKGSSRSRYNTDTSGSNKVLLDTNLVERLRTE
PIFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDDERKELVLGIIDFMRQYTWDKHLETWVKSSGILGGPKNASPTIVSPKQYKKRFRKAMTSYFL
TVPDQWSSRTESLHSCHS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71010 FAB1C FORMS APLOID AND BINUCLEATE CE... Potri.008G128800 0 1
AT1G34260 FAB1D FORMS APLOID AND BINUCLEATE CE... Potri.019G087000 1.41 0.8492
AT4G14220 RHF1A RING-H2 group F1A (.1) Potri.010G092300 2.00 0.8277
AT1G03060 SPI SPIRRIG, Beige/BEACH domain ;W... Potri.005G215400 2.00 0.8521
AT1G76140 Prolyl oligopeptidase family p... Potri.002G014000 3.87 0.8262
AT1G13940 Plant protein of unknown funct... Potri.008G092800 6.78 0.7693
AT1G19190 alpha/beta-Hydrolases superfam... Potri.004G142800 6.92 0.8262
AT1G29170 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROM... Potri.011G066100 8.30 0.8434
AT1G08760 Plant protein of unknown funct... Potri.007G131600 8.94 0.7786
AT1G54790 GDSL-like Lipase/Acylhydrolase... Potri.005G038850 9.00 0.7669
AT5G65170 VQ motif-containing protein (.... Potri.005G166100 9.64 0.7529

Potri.008G128800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.