Plant FIBer expression Database

Potri.008G128900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01350 552 / 0 QPT quinolinate phoshoribosyltransferase (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G113500
[exp]
342 / 5e-119 AT2G01350 271 / 3e-91 quinolinate phoshoribosyltransferase (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018780
[exp]
574 / 0 AT2G01350 558 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4)
Lus10018781
[exp]
573 / 0 AT2G01350 558 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4)
Lus10024868
[exp]
528 / 0 AT2G01350 536 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain
CL0105 Hybrid PF02749 QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain
Representative CDS sequence
>Potri.008G128900.1 pacid=42805882 polypeptide=Potri.008G128900.1.p locus=Potri.008G128900 ID=Potri.008G128900.1.v4.1 annot-version=v4.1
ATGTCTCGGATCATTTTTAGTTCTCCATCAACGCTACCACAATTATATTCAACTTCAAGGCGGATTGTTAAAATGTCTGTGGCTCAAACCATAAATCCTG
GAGTGTCTTTCCGGTCGATGGTAGTGAAACCTCCTTCACATCCTACATATGATATGAAGGGTGTTATTAAGCTGGCACTCGCTGAAGATGCTGGGGATCG
AGGAGATGTGACTTGTTTGGCAACAATTCCTTTTGACATGGAAGTGGAAGCCCATTTCTTGGCAAAGGAAGACGGCATCGTTGCTGGAATTTCACTTGCA
GAGATGATATTTCATGAGGTTGATCCCTCTCTAAAGGTAGAGTGGTCTCAGAAGGATGGAGATTATGTTCAGAAAGGACTGCAGTTTGGAAAAGTATCTG
GACAAGCACACAATATTGTTGTTGCTGAAAGAGTGGTGCTCAATTTTATGCAGCGGATGAGCGGAATAGCAACTCTGACTAAGACAATGGCTGATGCGGC
ACGCCCAGCTTGCATTTTAGAGACACGAAAAACGGCTCCAGGTTTACGTTTGGTTGATAAGTGGGCGGTTCTAATTGGTGGAGGGCGAAATCACAGAATG
GGTTTGTTTGATATGGTTATGATAAAAGATAATCATATATCAATAGCTGGAGGTATCATAAATGCCATCAAATCTGTTGATCAGTATTTAGAGCAACAAA
ACCTTCAAATGGAGGTTGAGGTTGAAACCAGGACTCTTGAGGAAGTAGATGAGGTGCTACGTTATACATCTCAAACAAAGTCATCCTTGACCCGGATAAT
GCTAGATAATATGGTTATACCACTACCAAATGGGGATGTTGATGTATCTATGCTTAAAGATGCTGTGGAAATGATCAACGGGAGATTTGAGACTGAGGCA
TCGGGCAATGTTACTCTTGAAACTGTACACAAAATTGGACAGACTGGGGTAACCTACATTTCCAGTGGTGCACTGACACATTCTGTAAAAGCACTTGACA
TCTCCCTCAAAATTGATACGGAGTTGGCACTTCAGGTTGGAAGGCGCACAAAACGAGCATGA
AA sequence
>Potri.008G128900.1 pacid=42805882 polypeptide=Potri.008G128900.1.p locus=Potri.008G128900 ID=Potri.008G128900.1.v4.1 annot-version=v4.1
MSRIIFSSPSTLPQLYSTSRRIVKMSVAQTINPGVSFRSMVVKPPSHPTYDMKGVIKLALAEDAGDRGDVTCLATIPFDMEVEAHFLAKEDGIVAGISLA
EMIFHEVDPSLKVEWSQKDGDYVQKGLQFGKVSGQAHNIVVAERVVLNFMQRMSGIATLTKTMADAARPACILETRKTAPGLRLVDKWAVLIGGGRNHRM
GLFDMVMIKDNHISIAGGIINAIKSVDQYLEQQNLQMEVEVETRTLEEVDEVLRYTSQTKSSLTRIMLDNMVIPLPNGDVDVSMLKDAVEMINGRFETEA
SGNVTLETVHKIGQTGVTYISSGALTHSVKALDISLKIDTELALQVGRRTKRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01350 QPT quinolinate phoshoribosyltrans... Potri.008G128900
[exp]
0 1
AT1G01730 unknown protein Potri.014G082600
[exp]
1.00 0.7672
AT2G18630 Protein of unknown function (D... Potri.005G127401
[exp]
6.32 0.7130
AT1G78700 BZR BEH4 BES1/BZR1 homolog 4 (.1) Potri.003G026600
[exp]
9.16 0.6436
AT2G42500 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2... Potri.003G217900
[exp]
9.38 0.7156 Pt-PP2.3
AT1G78700 BZR BEH4 BES1/BZR1 homolog 4 (.1) Potri.001G386900
[exp]
10.58 0.6537
AT4G27690 VPS26B vacuolar protein sorting 26B (... Potri.006G081300
[exp]
16.43 0.7273
AT4G31270 Trihelix sequence-specific DNA binding ... Potri.006G279100
[exp]
17.97 0.6694
AT1G21200 Trihelix sequence-specific DNA binding ... Potri.003G204700
[exp]
23.87 0.6760
AT2G36290 alpha/beta-Hydrolases superfam... Potri.010G237700
[exp]
29.69 0.6671
AT5G02270 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRI... Potri.003G155800
[exp]
31.17 0.6911

Potri.008G128900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.