Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70950 242 / 1e-72 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G23060 105 / 3e-24 unknown protein AT4G32330 105 / 4e-24 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G35880 103 / 3e-23 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G25480 99 / 8e-22 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G23090 88 / 1e-18 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G24160 87 / 7e-18 unknown protein AT1G70100 83 / 1e-16 unknown protein AT3G26050 82 / 3e-16 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G04630 77 / 3e-15 WDL1 WVD2-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G113000 [exp] 867 / 0 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 106 / 2e-24 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.018G027500 [exp] 103 / 3e-23 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.008G162800 [exp] 94 / 2e-20 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.016G066600 [exp] 94 / 5e-20 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G076200 [exp] 92 / 1e-19 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G038100 [exp] 92 / 2e-19 AT1G70100 196 / 4e-56 unknown protein Potri.008G192800 [exp] 92 / 3e-19 AT1G70100 197 / 6e-57 unknown protein Potri.006G200400 [exp] 91 / 3e-19 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002915 [exp] 99 / 7e-22 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10021223 [exp] 92 / 9e-20 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10029213 [exp] 88 / 2e-19 AT1G24160 135 / 2e-36 unknown protein Lus10022213 [exp] 89 / 2e-18 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10016193 [exp] 89 / 3e-18 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10010725 [exp] 89 / 3e-18 AT1G70100 213 / 2e-62 unknown protein Lus10029355 [exp] 89 / 3e-18 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10037054 [exp] 87 / 1e-17 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10005533 [exp] 78 / 2e-15 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 78 / 2e-15 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.008G129300.1 pacid=42808559 polypeptide=Potri.008G129300.1.p locus=Potri.008G129300 ID=Potri.008G129300.1.v4.1 annot-version=v4.1 ATGGCGGCAGACTTTCAAGAATCATTTGGCAGCAGCATTAGCTTTCAGGCAGATTCTTTGCACTCGTCCATATCATTTGGAAGATTTGAGAGTGAGGACT TGCCTTGGGAGAGAAGATCGTCTTTTTCTCACAATAGGTATCTCGAAGAGGTTGAGAAATGCTCAAAACCAGGTTCTGTAATTGAGAAGAAAGCTTATTT TGAAGCCCATTTCAAGAAAAAGGGTATTCTGCTACCAGGTTCCTTTGATGGCCTAAATGGTAGAGGATGCCAGAACGGGGAAAATGAAAATGATGGTCAT GAAAACTTGGGTCAAGGAGAAGAAGATTATATTTTGGATGGAAGTTGCAATTATTTTCATTCTGAAGATGATGAGCTGCTGGAAAATGTGGGCTTCAACG GATTTGATAACGGAAACGACGGGGGCGAATTTGAGTATGTACATGACGAGAATCATCATGCTCACTTTGATGAGAGTCCTGTAGGTTCTGAATATCACGG AGAATGTGAAGTCATTGAATGTCAAAAAGAGGATCCTGTTGTTTTGCCTTCTGAATCTCGCTTGGAAGCTGCTGTGGACGATGCTGATGTTTTGGTCAAA GGCGTGGATGAAGATGTTAAACCTGAGGAAGTACATCAAATTGAAACCATGCGTGATGAGTTGCATCTCAACAATGACAAACAAGAAATGGGAATGAAAT ATAACCTTGAGGCTAATGCCGCCAATGTAGATGAATCGTCTACGGAGATTGATCTGTCTCCTAAATGCGGAACAACCAAGGATCTTGACAGCACTACTGC AGGGCATCGACAAAATCTTTCTCCGAAGTCGAGAGCTTCTGATGAAAGTAAATCTACGAAGCCCAGAATGAAGTCTCTGATTAATGGCAGTCAAGTCCAG AAGATCCTTGACAACGTCACAAAAACTGCTGCAAGAAATCAGAATATAAGAGAAAGAGAAACACCACAAAGAGCAAAATCAGAAAAGCAGTCATCACGAG CTGCCACTCCTACCAGACGTGTGTTGCATAGAGCTAAAAACGAAGAGAATTCTGAAAGTGGCAATTCAAGGATACATCCTGTGAATAAAAGTGAAAAGGA ACCAAGAGTGAAGAAATTTGAATCTCCATCCTCTAGATCAAAAAGAGTTGAACCTATTGCTCATCTAAGCACAAACAGAACTAAGCAGAATGCTAGTTCA ATAAATCCAGACACAAGGCCAAGTGCCTCGACCTTCAGTTTCAAGAGTGATGAAAGAGCAGAAAGGAGAAAAGAGTTCTATATGAAGTTGGAAGAAAAAT GGCATGCTAAGGAGGCAGAAATGAATCAGATTCAGGCAAAAACACAACAGGAAAAGACGGAAGCTGAAATTAAACAATTCAGGAAAAGCCTTAATTTCAA AGCTACACCCATGCCTTCATTCTATCATGTAGCTGTACCACCGGCCTCCAATGGAAACAAGGCTTCATTATCTAAAACCAAACCAGCTAAAGCACGGCAC AAGTCAACAAGTCCAGCGAGTGGAGCTGCTGCTAGGCCACAATTACTTTCCAGGGCCGGAAAAGACCAAGCCCTCTCTGCTAATGAATTTGTGAAAACAA CTAATCAGCCTGAACCCTCAGAAAGAACCGATCATCCTCCAACAAAGGTTTCTGAAGCTCTCGATACTTCACCAACCAACAATAGCAGGCACAATCCAGA AGCTCTAACTAAAACTGGTGTCACTGGTAAGAACGAGAGAGGAGGGAAGGTGAAGGATCCTAATTTTAAAAGGCATCGAGTATCAGAAAATACCAAAGTA CCAAAAGACCCGAAGTTTGAGGGAAAGGCAAAAATGGGAAACCACAGAAGTAGCAGTGAGATGTTGAGGAAAAGTATAAAACGCATTGGAAGTGGAAGTA ATTCTGGAATGGGTCATCTAGCTGTTGGTGTAGCCTCCTGA
AA sequence Show only first row Show all	>Potri.008G129300.1 pacid=42808559 polypeptide=Potri.008G129300.1.p locus=Potri.008G129300 ID=Potri.008G129300.1.v4.1 annot-version=v4.1 MAADFQESFGSSISFQADSLHSSISFGRFESEDLPWERRSSFSHNRYLEEVEKCSKPGSVIEKKAYFEAHFKKKGILLPGSFDGLNGRGCQNGENENDGH ENLGQGEEDYILDGSCNYFHSEDDELLENVGFNGFDNGNDGGEFEYVHDENHHAHFDESPVGSEYHGECEVIECQKEDPVVLPSESRLEAAVDDADVLVK GVDEDVKPEEVHQIETMRDELHLNNDKQEMGMKYNLEANAANVDESSTEIDLSPKCGTTKDLDSTTAGHRQNLSPKSRASDESKSTKPRMKSLINGSQVQ KILDNVTKTAARNQNIRERETPQRAKSEKQSSRAATPTRRVLHRAKNEENSESGNSRIHPVNKSEKEPRVKKFESPSSRSKRVEPIAHLSTNRTKQNASS INPDTRPSASTFSFKSDERAERRKEFYMKLEEKWHAKEAEMNQIQAKTQQEKTEAEIKQFRKSLNFKATPMPSFYHVAVPPASNGNKASLSKTKPAKARH KSTSPASGAAARPQLLSRAGKDQALSANEFVKTTNQPEPSERTDHPPTKVSEALDTSPTNNSRHNPEALTKTGVTGKNERGGKVKDPNFKRHRVSENTKV PKDPKFEGKAKMGNHRSSSEMLRKSIKRIGSGSNSGMGHLAVGVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70950			TPX2 (targeting protein for Xk...		Potri.008G129300 [exp]	0	1
AT1G70950			TPX2 (targeting protein for Xk...		Potri.010G113000 [exp]	2.44	0.7592
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.016G024400 [exp]	4.24	0.7075
					Potri.002G100700 [exp]	9.53	0.6844
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	12.00	0.7141
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	18.33	0.7043
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.002G045900 [exp]	26.07	0.6738	HAG906,HAT1.6
AT3G28410			F-box/RNI-like superfamily pro...		Potri.017G146400 [exp]	26.83	0.6621
AT2G39980			HXXXD-type acyl-transferase fa...		Potri.008G065000 [exp]	30.39	0.6649
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.010G006800 [exp]	32.04	0.6647	RAP2.3,ERF34
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.008G210900 [exp]	34.27	0.6529	Pt-RAP2.4,ERF35

Compare expression of checked genes

Potri.008G129300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.