Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01430 206 / 2e-66 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 191 / 3e-61 HD ATHB18 homeobox-leucine zipper protein 18 (.1) AT5G06710 175 / 2e-53 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT3G60390 167 / 7e-51 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT4G37790 166 / 2e-50 HD HAT22 Homeobox-leucine zipper protein family (.1) AT4G16780 162 / 3e-49 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT2G44910 162 / 1e-48 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT2G22800 160 / 2e-48 HD HAT9 Homeobox-leucine zipper protein family (.1) AT4G17460 159 / 1e-47 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT5G47370 155 / 2e-46 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G112600 [exp] 313 / 3e-109 AT2G01430 211 / 1e-68 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) Potri.005G147100 [exp] 176 / 2e-54 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.007G008200 [exp] 176 / 2e-54 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.009G023600 [exp] 175 / 4e-53 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.014G045100 [exp] 173 / 4e-53 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.016G059000 [exp] 172 / 2e-52 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.002G113400 [exp] 169 / 6e-52 AT4G37790 210 / 3e-67 Homeobox-leucine zipper protein family (.1) Potri.001G229700 [exp] 171 / 2e-51 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.001G155100 [exp] 169 / 2e-51 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021064 [exp] 174 / 5e-54 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10004759 [exp] 173 / 7e-53 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 172 / 1e-52 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004161 [exp] 172 / 6e-52 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10040175 [exp] 169 / 3e-51 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 169 / 4e-51 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10016254 [exp] 170 / 5e-51 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 169 / 1e-50 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10019256 [exp] 139 / 8e-41 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 133 / 2e-38 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.008G129500.1 pacid=42807471 polypeptide=Potri.008G129500.1.p locus=Potri.008G129500 ID=Potri.008G129500.1.v4.1 annot-version=v4.1 ATGGCGGTTTCACCCTCAAGCATTTCTAGCTTGGAGTTGACCATATCTATGCCTGGCTTCTCTTCTTCTCCTCCTTGTCCTTCATCTGAGGTTTGTGCCG TGAAAGATTTGGACATAAACCAACTACCATCAGGAACAGGAGAAGAAGAATGGATCACTGCGGGCATGGAAGATGAAGAGGAAAGCACTAATGGAGGCCC ACCTCGCAAAAAACTCCGTCTCTCTAAGGAACAGTCTCGCCTTCTTGAAGAAAGTTTCAGGCAACATCACACCTTAAACCCTAGACAAAAAGAAGCATTA GCTTTGCAATTGAAGCTGAGGCCTAGACAAGTTGAGGTGTGGTTTCAAAACCGGAGGGCCAGGAGCAAGCTTAAGCAGACAGAGATGGAGTGTGAGTATT TGAAGAGATGGTTTGGTTCATTAACCGAGCAAAACAGAAGGTTGCAAAGAGAAGTAGAGGAGCTTAGGGCATTAAAGGTGGGTCCACCAACCGTGATGTC TCCTCACAGTTGTGAACCTCTTCCAGCATCCACCCTTACTATGTGTCCAAGTTGTGAGCGTGTGACAACCACCGGCTTGGACAAGGGCTCCACCAAAACC ACCACCACTGCTGTGGCCACCCCAACAATAGCCGCCACCTTGTCCTCTAAAGTTGGGACACCCGCACTCCAATCTCGGCAATCTTCTGCGGCTTGTTAG
AA sequence Show only first row Show all	>Potri.008G129500.1 pacid=42807471 polypeptide=Potri.008G129500.1.p locus=Potri.008G129500 ID=Potri.008G129500.1.v4.1 annot-version=v4.1 MAVSPSSISSLELTISMPGFSSSPPCPSSEVCAVKDLDINQLPSGTGEEEWITAGMEDEEESTNGGPPRKKLRLSKEQSRLLEESFRQHHTLNPRQKEAL ALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRALKVGPPTVMSPHSCEPLPASTLTMCPSCERVTTTGLDKGSTKT TTTAVATPTIAATLSSKVGTPALQSRQSSAAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01430	HD	ATHB17, ATHB-17	ARABIDOPSIS THALIANA HOMEOBOX-...		Potri.008G129500 [exp]	0	1
AT5G10190			Major facilitator superfamily ...		Potri.007G091800 [exp]	6.24	0.7768
AT5G57700			BNR/Asp-box repeat family prot...		Potri.018G097100 [exp]	6.92	0.7188
AT4G24730			Calcineurin-like metallo-phosp...		Potri.012G089300 [exp]	9.16	0.7671	WR3.1
					Potri.007G048600 [exp]	11.13	0.7828
AT1G07030			Mitochondrial substrate carrie...		Potri.001G282400 [exp]	12.24	0.7780
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	14.73	0.7498
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.001G070600 [exp]	16.06	0.7536
AT1G75980			Single hybrid motif superfamil...		Potri.002G018100 [exp]	21.90	0.7240
AT1G59600		ZCW7	ZCW7 (.1)		Potri.002G118300 [exp]	23.45	0.7206
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Potri.015G144600 [exp]	23.45	0.7427

Compare expression of checked genes

Potri.008G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.