Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15000 529 / 0 SCPL50 serine carboxypeptidase-like 50 (.1) AT5G22980 189 / 1e-54 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G10410 189 / 4e-54 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 185 / 8e-53 SCPL48 serine carboxypeptidase-like 48 (.1) AT3G52000 154 / 2e-41 SCPL36 serine carboxypeptidase-like 36 (.1) AT3G52010 150 / 4e-40 SCPL37 serine carboxypeptidase-like 37 (.1) AT2G23010 140 / 5e-37 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT3G12203 137 / 1e-35 SCPL17 serine carboxypeptidase-like 17 (.1) AT5G23210 137 / 3e-35 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G63470 136 / 5e-35 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G129850 [exp] 832 / 0 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.005G060100 [exp] 720 / 0 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G034800 [exp] 186 / 2e-53 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 182 / 6e-52 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 172 / 4e-48 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.009G055900 [exp] 155 / 7e-42 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.001G261100 [exp] 148 / 2e-39 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.008G041800 [exp] 144 / 6e-38 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.007G072300 [exp] 138 / 7e-36 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026331 [exp] 523 / 0 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 520 / 0 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1) Lus10042334 [exp] 518 / 0 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10041339 [exp] 185 / 9e-53 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10037958 [exp] 184 / 2e-52 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 178 / 6e-50 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 169 / 8e-47 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10023505 [exp] 148 / 1e-39 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 144 / 6e-38 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10013446 [exp] 129 / 7e-36 AT1G15000 127 / 5e-36 serine carboxypeptidase-like 50 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.008G129800.1 pacid=42807363 polypeptide=Potri.008G129800.1.p locus=Potri.008G129800 ID=Potri.008G129800.1.v4.1 annot-version=v4.1 ATGGAGTCAACGACAGTCCTCTTCCTCTTCCTCCTCTTCCTCTTCCTCCACCATCCTTCAGCTACATCATCAACACCCACCTCTATTTTCCCAAACGAAG CTCTCCCCACAAATTCAGGTTATATCCCTGTCAAACCCAAAACCAACTCAGCTATTTTCTACACGTTTTACGAGGCTCAAAAACCGACTTCACCTCTTTC CCAAACCCCACTTCTCATCTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGACTGGAAACTTCCTTGAACTTGGCCCTTATCGCGTTGTCGATTCGCAA GACAACGACCACCCTGCTCTTCAGCCTAATTTAGGCTCCTGGAACCGTATTTTTGGCCTAATTTTCATCGATAACCCAATAGGAACCGGATTTAGTATCG CTTCGAGCCCTGAAGAGATACCAAGAGATCAACACACTGTTGCTGAGCATCTCTTCGCCGCCATCTCTGAGTTTATTAAACTAGACCCAGTGTTCAAGAC TCGCCCGATTTATATAACCGGAGAGAGTTATGCAGGAAAGTATGTTCCTGCAATTGGGTATTACATTTTGAAGAAGAATACGAAGCTGCCTGCGGCGAAA CAAGTGAATCTGAAAGGTGTTGCTATAGGTAATGGGTTAACGGATCCGGTGACACAAGTCAAAACTCATGCCCTGAATGCTTACTTTTCTGGATTGATCA ATGAGAGACAAAAGGGTGAACTGGAAGAAGCTCAAAGGGAGGCAGTTAAGTTGGTTAAAATGGGAAATTGGAGTGAGGCAACAGATGCAAGAAGTAGGGT CTTGAATTTGTTGCAAAACATGACAGGACTAGCCACTCTGTATGACTTCACTAGAAAAGTGCCTTACGAAACAGAATTGGTAACTAAATTGATGCAACTA GCCGAAGTGAAGGTTGCATTGAAGGCAAATGAATCTATAGTTTTTGAGGATTGTAGTGACACGGTGGGGGAAGCATTGCATGAAGATGTAATGAAGAGCG TTAAGTATATGGTGGAATTCTTGGTTAAGAAGAGTAACGTGTTTTTGTATCAAGGGCATTTTGATTTGAGAGATGGAGTGGTTTCAACAGAGGCTTGGGT CAAGACAATGAAATGGGAAGGGATAGGGAAGTACTTGATGGCTGAGAGGAAGGTGTGGAAAGTAAATGGTGTGCTTGCTGGGTATGTGCAGAAGTGGAGG AGTTTTAGCAATGCTGTGGTGTTAGGGGCTGGGCATCTTGTGCCTACTGACCAAGCAGTGAATTCTCAGGCTATGATAGAGGATTGGGTCCTGGAAAGGG GGGTCTTTGCTAATGTGGAAGGGGAGGATTCCGTGTCAGATTCCAGAGGAGCACTCTGA
AA sequence Show only first row Show all	>Potri.008G129800.1 pacid=42807363 polypeptide=Potri.008G129800.1.p locus=Potri.008G129800 ID=Potri.008G129800.1.v4.1 annot-version=v4.1 MESTTVLFLFLLFLFLHHPSATSSTPTSIFPNEALPTNSGYIPVKPKTNSAIFYTFYEAQKPTSPLSQTPLLIWLQGGPGCSSMTGNFLELGPYRVVDSQ DNDHPALQPNLGSWNRIFGLIFIDNPIGTGFSIASSPEEIPRDQHTVAEHLFAAISEFIKLDPVFKTRPIYITGESYAGKYVPAIGYYILKKNTKLPAAK QVNLKGVAIGNGLTDPVTQVKTHALNAYFSGLINERQKGELEEAQREAVKLVKMGNWSEATDARSRVLNLLQNMTGLATLYDFTRKVPYETELVTKLMQL AEVKVALKANESIVFEDCSDTVGEALHEDVMKSVKYMVEFLVKKSNVFLYQGHFDLRDGVVSTEAWVKTMKWEGIGKYLMAERKVWKVNGVLAGYVQKWR SFSNAVVLGAGHLVPTDQAVNSQAMIEDWVLERGVFANVEGEDSVSDSRGAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129800 [exp]	0	1
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129850 [exp]	1.00	0.8963
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128650 [exp]	13.22	0.7455
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	13.85	0.8086	CNX2.1
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.017G101400 [exp]	14.28	0.7537
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	18.81	0.7894
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	22.80	0.7873
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.002G159200 [exp]	24.59	0.6975
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125301 [exp]	27.01	0.7672
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170300 [exp]	30.04	0.7495
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Potri.006G148800 [exp]	31.62	0.7311

Compare expression of checked genes

Potri.008G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.