Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15000 523 / 0 SCPL50 serine carboxypeptidase-like 50 (.1) AT3G10410 184 / 2e-52 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT5G22980 181 / 1e-51 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G45010 181 / 3e-51 SCPL48 serine carboxypeptidase-like 48 (.1) AT3G52000 150 / 2e-40 SCPL36 serine carboxypeptidase-like 36 (.1) AT3G52010 147 / 5e-39 SCPL37 serine carboxypeptidase-like 37 (.1) AT2G23010 142 / 9e-38 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT2G05850 139 / 2e-36 SCPL38 serine carboxypeptidase-like 38 (.1) AT2G22970 138 / 3e-36 SCPL11 serine carboxypeptidase-like 11 (.1.2.3) AT2G22920 137 / 6e-36 SCPL12 serine carboxypeptidase-like 12 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G129800 [exp] 831 / 0 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.005G060100 [exp] 701 / 0 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G034800 [exp] 181 / 3e-51 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 177 / 4e-50 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 169 / 6e-47 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.009G055900 [exp] 149 / 8e-40 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G056000 [exp] 139 / 6e-36 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.008G041800 [exp] 137 / 8e-36 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.013G124900 [exp] 136 / 2e-35 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026331 [exp] 513 / 0 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10042334 [exp] 513 / 0 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 511 / 2e-180 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1) Lus10037958 [exp] 180 / 4e-51 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 176 / 1e-49 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10038691 [exp] 174 / 1e-48 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 163 / 2e-44 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10023505 [exp] 144 / 3e-38 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 141 / 3e-37 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10018667 [exp] 144 / 1e-36 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.008G129850.1 pacid=42808294 polypeptide=Potri.008G129850.1.p locus=Potri.008G129850 ID=Potri.008G129850.1.v4.1 annot-version=v4.1 ATGGAGTCAACAACAGTCATTTTCCTCTTCCTCCTCTTCCTCTTCCTCCACCATCCTTCAGCTACATCATCAACACCCACCTCTATTTTCCCAAACGAAG CTCTCCCCACAAAATCAGGTTATATCCCTGTCAAACCCAAAACCAGCTCAGCTATTTTCTACACGTTTTACGAGGCTCAAAAACCGACTTCACCTCTTTC CCAAACCCCACTTCTCATATGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATTGGAAACTTCCTTGAACTTGGCCCTTATCGCGTTGTCGATTCGCAA GACAACGAACACCCTGCTCTTCAGCCCAATTTAGGCTCCTGGAACCGTATTTTTGGCCTCATTTTCATCGATAACCCAATAGGGACCGGATTTAGTATCG CTTCGAGCCCTGAAGAGATACCAAGAGATCAACACACTGTTGCTGAGCATCTCTTCGCCGCCATCTCTGAGTTTATTAAACTAGACCCAGTGTTCAAGAC TCGCCCGATTTATATAACCGGAGAGAGTTATGCAGGAAAGTATGTTCCTGCAATTGGGTATTACATTTTGAAGAAGAATACGAAGCTGCCTGTGGCGAAA CAAGTGAATCTGAAAGGTGTTGCTATAGGTAATGGGGTAACGGATCCGGTGACACAAGTCAAAACTCATGCCCTGAATGCTTACTTTTCTGGATTGATCA ATGAGAGACAAAAGGGTGAACTGGAAGAAGCTCAAAGGGAGGCAGTTAAGTTGGTTAGAATGGGAAATTGGAGTGAGGCAACAGATGCAAGAAGTAGGGT CTTGAAATTGTTGCGACACATGACAGGACTAGCCACTTTGAATGACTTCACTAGGAAAGTGCCCTACAAAACAAAATTGGTAACTAAATTGATGCAACTA GCCGAAGTGAAGGTTGCATTGAAGGCAAATGAATCTATAGTTTTTGAGGATTGTAGTGACACGGTGGGGGAAGCATTGCATGCAGATGTAATGAAGAGCG TTAAGTATATGGTGGAATTCTTGGTTAAGAAGAGTAACGTGTTGTTGTATCAAGGGCATCTTGATTTGAGAGATGGAGTGTTTTCAACAGAAGCTTGGGT CAAGACAATGAAATGGGAAGGGATTGGGGAATATTTGATGGCTGAGAGGAAGGTGTGGAAAGTAAATGGTGTGCTTGCTGGGTATGTGCAGAAGTGGAGG AGTTTTAGCAATGCTGTGGTGTTAGGGGCTGGGCATCTTGTGCCTAATGACCAAGCAGTGAATTCTCAGGCTATGATAGAGGATTGGGTCCTGGAAAGGG GGGTCTTTGCTAATGCGGAAGGGGAGCTCTGA
AA sequence Show only first row Show all	>Potri.008G129850.1 pacid=42808294 polypeptide=Potri.008G129850.1.p locus=Potri.008G129850 ID=Potri.008G129850.1.v4.1 annot-version=v4.1 MESTTVIFLFLLFLFLHHPSATSSTPTSIFPNEALPTKSGYIPVKPKTSSAIFYTFYEAQKPTSPLSQTPLLIWLQGGPGCSSMIGNFLELGPYRVVDSQ DNEHPALQPNLGSWNRIFGLIFIDNPIGTGFSIASSPEEIPRDQHTVAEHLFAAISEFIKLDPVFKTRPIYITGESYAGKYVPAIGYYILKKNTKLPVAK QVNLKGVAIGNGVTDPVTQVKTHALNAYFSGLINERQKGELEEAQREAVKLVRMGNWSEATDARSRVLKLLRHMTGLATLNDFTRKVPYKTKLVTKLMQL AEVKVALKANESIVFEDCSDTVGEALHADVMKSVKYMVEFLVKKSNVLLYQGHLDLRDGVFSTEAWVKTMKWEGIGEYLMAERKVWKVNGVLAGYVQKWR SFSNAVVLGAGHLVPNDQAVNSQAMIEDWVLERGVFANAEGEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129850 [exp]	0	1
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129800 [exp]	1.00	0.8963
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.004G201400 [exp]	8.48	0.8506	Pt-NLP1.2
AT2G30140			UDP-Glycosyltransferase superf...		Potri.001G281900 [exp]	11.74	0.8001
AT1G11050			Protein kinase superfamily pro...		Potri.017G132250 [exp]	22.97	0.7748
AT4G17940			Tetratricopeptide repeat (TPR)...		Potri.001G140500 [exp]	25.88	0.7310
AT2G17640		SAT-106, AtSera...	SERINE ACETYLTRANSFERASE 106, ...		Potri.011G068001 [exp]	38.34	0.7955
AT5G07900			Mitochondrial transcription te...		Potri.001G034700 [exp]	39.68	0.7890
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094800 [exp]	42.82	0.7912
AT1G76920			F-box family protein (.1)		Potri.002G069900 [exp]	54.65	0.7639
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.001G271700 [exp]	60.59	0.7721	MPK3.1

Compare expression of checked genes

Potri.008G129850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.