Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73670 697 / 0 ATMPK15 MAP kinase 15 (.1) AT3G18040 678 / 0 ATMPK9 MAP kinase 9 (.1.2) AT2G01450 677 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT1G18150 654 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT5G19010 644 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT2G42880 629 / 0 ATMPK20 MAP kinase 20 (.1) AT3G14720 604 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 591 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT4G01370 322 / 2e-106 ATMPK4 MAP kinase 4 (.1) AT3G45640 317 / 8e-105 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G112200 [exp] 922 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.012G048600 [exp] 697 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 694 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G029700 [exp] 656 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 652 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.011G102500 [exp] 629 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.002G059900 [exp] 624 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 621 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.001G381300 [exp] 603 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021784 [exp] 789 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10034601 [exp] 688 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10038956 [exp] 667 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10041234 [exp] 641 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 633 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10027248 [exp] 609 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10013702 [exp] 607 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10005568 [exp] 606 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10008339 [exp] 330 / 4e-109 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 330 / 5e-109 AT2G43790 692 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G130000.2 pacid=42808743 polypeptide=Potri.008G130001.1.p locus=Potri.008G130000 ID=Potri.008G130000.2.v4.1 annot-version=v4.1 ATGCTTGATAGAGAAATTTTCACTGAGTATGGAGAAGCAAGCCAGTATGAAATTCAAGAAGTAGTCGGAAAAGGAAGCTATGGCGTTGTTGCATCCGCCA TAGATACTCACACGGGAGAGAGGGTCGCTATCAAAAAGATGACCAACATCTTTGAGCATGTCTCCGATGCTACACGTATTCTACGTGAGATCAAGCTGCT CAGGCTGCTTAAACACCCTGATATTGTAGAAATCAGACATATTATGCTCCCTCCTTCTCCAAGAGAGTTTAAAGATATTTATGTGGTGTTTGAGTTGATG GAATCTGACCTTCATCAAGTTATCAAGTTAAATAATGACCTCACTCCTGAACATCACCAGTTTTTCTTGTACCAGCTTCTTCGAGCTCTCAAATATATAC ATGCAGGAAATGTGTTTCATCGAGACTTGAAGCCCAAAAATATTCTTGCTAATGCCGATTGTAAATTAAAGCTTTGTGACTTTGGGCTGGCTCGTGTGTC ATTTAGTAATGCTCCTTCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCCCCAGAACTCTGCGGCTCCTTTTCATCTAAGTACACT CCTGCTATTGATATTTGGAGCATAGGTTGTATATTTGCAGAATTGTTGACGGGGAAACCCTTGTTTCCTGGAAAAAATGTCGTGCATCAATTGGAACTCA TAACCGATTTGCTTGGCACTCCTTCGGCTGAATCCATTGCTCGAATTAGTAATGAAAAGGCTAGGAAGTATTTGAGTAGCATGAGGAAAAAGCGGCCAAT TCCTTTCTCAAAAAAATTTCCAGATGTAGACCGATCAGCTTTGCGTATACTTGAGCGGTTGCTGGCATTTGATCCTAAAGATCGCCCATCTGCTGAAGAG GCTTTAGCTGATCCATATTTTGACGGACTAGCAGATAAGGAGGAAGAACCTTCAAGGAAACCCATTTCAAAACTTGAGTTCGAATTTGAAAGGAGGAAAT TGACAAGAGATGATGTAAGAGAACTGATTTACAGAGAGATTTTGGAGTATCATCCAGAGATGCTAAAAGAGTACCTTCGGGGCACAGATCAGACTCACTT TGTTTATCCAAGTGGAGTGGATCGCTTTAAGGAACAATTTGCTCATCTTGAGGAAGGAGATGGTACAAGTGACAGAAACAGCCCTCACCATAGGAAGCAT GCGACCTCCTTGCCTAGGGAGCGAGTCTGCACAGCTGATGAAACTGACAATGCTTTAAAGCGCAATGCATCTTCTCTTTCTCGCGCAACTGTACAGAGCC CCCCAAAGTCGCAAGCTACAGAAGAACTGCAATCTGCTAACCGAAATGCTGTAGCTATGCAGACCAGCTCCACTAAACCCAAGTGTGGCACACGTACTCT GTTGAAAAGTGACAGCATTTGTGCTTCAATGTGTGTGGGACTAATCGGAAATGATCGCCAGGTACATGCTCTCTGA
AA sequence Show only first row Show all	>Potri.008G130000.2 pacid=42808743 polypeptide=Potri.008G130001.1.p locus=Potri.008G130000 ID=Potri.008G130000.2.v4.1 annot-version=v4.1 MLDREIFTEYGEASQYEIQEVVGKGSYGVVASAIDTHTGERVAIKKMTNIFEHVSDATRILREIKLLRLLKHPDIVEIRHIMLPPSPREFKDIYVVFELM ESDLHQVIKLNNDLTPEHHQFFLYQLLRALKYIHAGNVFHRDLKPKNILANADCKLKLCDFGLARVSFSNAPSAIFWTDYVATRWYRAPELCGSFSSKYT PAIDIWSIGCIFAELLTGKPLFPGKNVVHQLELITDLLGTPSAESIARISNEKARKYLSSMRKKRPIPFSKKFPDVDRSALRILERLLAFDPKDRPSAEE ALADPYFDGLADKEEEPSRKPISKLEFEFERRKLTRDDVRELIYREILEYHPEMLKEYLRGTDQTHFVYPSGVDRFKEQFAHLEEGDGTSDRNSPHHRKH ATSLPRERVCTADETDNALKRNASSLSRATVQSPPKSQATEELQSANRNAVAMQTSSTKPKCGTRTLLKSDSICASMCVGLIGNDRQVHAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.008G130000 [exp]	0	1
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.008G186601 [exp]	6.48	0.9701
AT5G42070			unknown protein		Potri.001G089500 [exp]	15.16	0.9634
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Potri.001G184000 [exp]	15.23	0.9643
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	20.92	0.9618	Pt-RPL12.6
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	21.81	0.9615
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G189100 [exp]	23.66	0.9471
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.014G153000 [exp]	27.38	0.9561
AT5G35100			Cyclophilin-like peptidyl-prol...		Potri.006G189900 [exp]	28.56	0.9588
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.008G045800 [exp]	30.03	0.9559
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124500 [exp]	30.59	0.9173

Compare expression of checked genes

Potri.008G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.