Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30110 300 / 8e-106 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT3G10620 209 / 2e-69 ATNUDX26 nudix hydrolase homolog 26 (.1) AT5G06340 197 / 2e-64 ATNUDX27 nudix hydrolase homolog 27 (.1) AT4G25434 42 / 7e-05 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47650 42 / 7e-05 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G112000 [exp] 350 / 2e-125 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G242100 [exp] 214 / 5e-71 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G017900 [exp] 206 / 4e-68 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.016G070900 [exp] 194 / 3e-63 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.006G203700 [exp] 194 / 4e-63 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.014G168400 [exp] 45 / 8e-06 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 41 / 0.0001 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 40 / 0.0003 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 39 / 0.0009 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003714 [exp] 302 / 1e-106 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 246 / 7e-76 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10018988 [exp] 214 / 2e-71 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10033839 [exp] 197 / 4e-64 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10021279 [exp] 195 / 2e-63 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 192 / 4e-62 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 190 / 2e-61 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 184 / 3e-59 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 178 / 8e-57 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 176 / 2e-55 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.008G130100.1 pacid=42807180 polypeptide=Potri.008G130100.1.p locus=Potri.008G130100 ID=Potri.008G130100.1.v4.1 annot-version=v4.1 ATGGATGGTCTGCCCTCTGGATATCGCCCCAACGTTGGTGTCTGTCTCATCAACTCTGATAACCTGGTTTTTGTGGCATCAAGATTAAATGTTCCAGGAG CATGGCAGATGCCTCAGGGGGGCATTGAAGATGGTGAGGAGCCTAAGTCTGCAGCCATCAGGGAACTGCTGGAAGAAACTGGGATAGTCTCTGCTGAAAT TATTGCCGAGGTTCCAAATTGGTTGACTTATGACTTCCCCCCTGCCGTGAAAGCCAAAGTGAATCGTCTTTGGGGAGGTGAATGGCACGGACAGGCACAA AAGTGGTTTCTTATGAGATTAACAAAAGACGAGAGTGAGATCAACTTAGGAAGTGGTGAAGCAGATCCTGAATTTGCAGAGTGGAAATGGACAAGTCCTG AAGAAGTTATCGAACAGGCAGTGGACTACAAGAGGCCAACTTATGAAGAAGTCATGAGGACATTTAGGCCTTACTTGAATGAAAATGGAATAGCTGCTAA ATGTAAATCTTCGAAGTGGTAA
AA sequence Show only first row Show all	>Potri.008G130100.1 pacid=42807180 polypeptide=Potri.008G130100.1.p locus=Potri.008G130100 ID=Potri.008G130100.1.v4.1 annot-version=v4.1 MDGLPSGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELLEETGIVSAEIIAEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQ KWFLMRLTKDESEINLGSGEADPEFAEWKWTSPEEVIEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSSKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.008G130100 [exp]	0	1
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.010G112000 [exp]	2.00	0.8830
AT3G62040			Haloacid dehalogenase-like hyd...		Potri.002G185300 [exp]	8.60	0.8861
AT1G18300		ATNUDT4	nudix hydrolase homolog 4 (.1)		Potri.012G044300 [exp]	10.90	0.8580
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112100 [exp]	11.09	0.8350
AT4G09890			Protein of unknown function (D...		Potri.007G077500 [exp]	14.14	0.8681
AT1G49470			Family of unknown function (DU...		Potri.009G108900 [exp]	17.43	0.8402
					Potri.010G230366 [exp]	17.49	0.8746
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031850 [exp]	18.43	0.8778
					Potri.012G054000 [exp]	19.79	0.8739
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.009G030800 [exp]	26.51	0.8423

Compare expression of checked genes

Potri.008G130100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.