Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01460 1337 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G26190 197 / 4e-53 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 194 / 5e-52 Phosphoribulokinase / Uridine kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111900 [exp] 1528 / 0 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G134400 [exp] 187 / 2e-49 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 186 / 3e-49 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 185 / 5e-49 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027063 [exp] 1356 / 0 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025598 [exp] 1316 / 0 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10030570 [exp] 187 / 1e-49 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 186 / 3e-49 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009040 [exp] 185 / 6e-49 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 175 / 2e-45 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00485 [poplar] [flax] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Potri.008G130200.3 pacid=42807498 polypeptide=Potri.008G130200.3.p locus=Potri.008G130200 ID=Potri.008G130200.3.v4.1 annot-version=v4.1 ATGGACGACGAGGTTGTTCAGCGATTATTCCACGAAGGAGGTCGCGATTACTTCCAGCAGCAACCTTCTACTTCCTCCTCATCCTCCTCATCCTCCTCCT CCATCCTCCAATCTCTCCCTCTTCATGTGTCTTTTGATCACGGATATTATTTACTGGTAAAATCTCTTCAAGAGCTCAGAGAGAAAAAGGAAGGTCTTGT TACTGTTGGCATTGGTGGTCCTAGCGGTTCAGGCAAAACAAGCTTAGCAGAGAAGGTGGCGTCTGTAATTGGCTGTGATGTTATATCGATGGAGAATTAT CGCACTGGAGTCGATGACGTGAGTGATTTGGATTCAATTGACTTCGACGCATTAGTACAAAATCTCGAGGATTTGACGAAAGGAAAAGATACTTTGATAC CAGTGTTTGATTACCAACAGAAGAGACGTATTGGTTCCAAAGGAATAAAGAGCATATCATCTGGAGTGGTGATAGTTGATGGTACATATGCTCTGCATGC AAGACTGCGCTCTTTACTGGATATTCGGGTTGCTGTGGTTGGCGGAGTTCACTTCAGTCTTCTTTCTAAAGTTCGATACGACATTGGGGATTCTTGTTCG TTGGATTACCTTATTGACAGCATCTTCCCAATGTTTAGGAAACACATTGAACCAGACCTTCACCATGCTCAGATCAGAATAAACAACAGCTTTGTCTCAT CATTTAGAGAAGCGATCTACAAGCTAAAATGCAGAAGTGAGTCACCAGGTGGACATTCTGCTTATGCCTTCCATGGAACAGCACATACAGATAATTTTAT TGAGATGTACCTTAGGCCTCCTTCAGCAAGTGAAGAAGCACGGACAAATGATTGGATCAAGGTGCGACAGTCTGGTATCAAATACTATTTGTCACTCGGG GACCAGAGAATTGTTGACAAACATTTTATTATCAGGCCAAAAGCTGAGTTTGAGGTTGGAAGAATGACACTCGGTGGGTTGCTGGCTTTGGGGTACACTG TTGTAGTGAGTTATAAACGGGCATCTTCATCTGTTAGTGATGGCAATCTATCAATGTCATTAGAGACCATTGATACTCTTAGTGAGACATTCATTGTGCT GAGGGGAACAGATAGGAAAACCGTTGGAGCAGAGGCAATGAGGATTGGTGTTAATGGACCTTGGATCACTAAGTCATATCTTGAATTGATACTTGAGAGA AAAGGTGTACCACGTCTTAATACCCCACCACTTTTACCTAATACTTCTACGACAAGCAATCAAGAAAGGGCTATTGTTGCCCCAAGGCCAATCCGTACCA CACCAAACCTTGTTAATCGGCTTGAGGATTTATCTCAGCCATGGACTCGGTCTCCTACAAAATCTAAAATGGAGCCTATGGTAGAAACATGGCATTTTAC ATCATCTGATACGTCACATGGGAGTTCCGTCATAGATTCTTCCACTTGCAGGGATAACATGAAGCTTGCACCTCTGCCTGATTCATATGACTTGGATAGA GGATTGCTTCTTGCTGTTCAAGCAATACAGGCTTTGTTGGAGAATAAAGGCTCCCCTGTCATTGTTGGAATCGGAGGCCCAAGTGGATCTGGAAAAACAA GTTTGGCACACAAAATGGCTAACATTGTTGGGTGTGAAGTAGTTTCCCTTGAAAACTATTTTAAATCTGAACTTGTGAAGGATTTTAAGTACGATGACTT TAGCTCTCTTGATCTGTCTTTGCTTTCAAAGAATATTGGTGACATAAGAAATGGTAGAAGAACAAAAGTACCCATGTTTGATTTGGAGACTGGTGCTCGT AGTGGATTCAAGGAACTTGAAGTTTCTGAAGACTGTGGTGTGATCATTTTTGAAGGGGTGTATGCTCTGCATCCTGAAATCCGAATATCACTTGACTTGT GGGTTGCTGTTGTTGGTGGTGTTCATTCACATCTTATTTCTCAAGTTCAAAGGGATAAAAGCAGAGGGGGGTGTTTTATGTCCCAAAATGAGATCATGAT GACAGTGTTTCCAATTTTCCAGCAGCATATTGAGCCACATCTTGTTCATGCACATCTCAAAATTCGGAATGACTTTGACCCTGTTATTTCCCCTGAGAGT TCTTCGTTTGTCTTGAAGAGTAATAAGCAGGTGGCTTATCAAGATATTTTGAAAATCCTAGATCCTGTGAAGTTGTGCAGTTCTGTTCAGAATTTCATTG ATATATATTTAAGGCTCCCTGGACTTCCTACAAATGGACAGTTGGCAGATGGTGATTGCATACGAGTCAGAATCTGTGACGGTAGATTTGCATTGTTGAT ACGGGAGCCTTTAAGAGAAGGGAATTTTATAATTCAACCAAAAGTGGATTTTGATATCAGCATCAGCACAGTTGCTGGACTTCTTAACCTCGGGTATCAA GCAGTAGCTTACATTGAAGCATCTGCATATATCTACCAAGATGGAAAGATTCTCATCGAGGTTGATCATCTGCAAGACACCCCTAGTCCTTACATACAGA TCAAGGGGGTTAATAAGGAAGCTGTGGCGGCTGCTGGTTCGACACTTAAACTGGATGGTTCATACACAACTAAGAGTTACCTGCAGATCATTTTGGAAAG ATTACCTGCAATGGAAAGAAGTTACAGTGGAATTCATGCTCAACAAGCTGCAAGGTTGCAGGAACTTGTGGAATTTATACAATCTCAGGGAAGCAGCTCA GCTTCAGAATCCTCTCCGAGCAGGGAGGCTGCTCCTTTGGAAGGAATAATTGAGGATATGCAGTTTAGAATCAAAAGGCTGGAAAGATGGCATACTATCA ACACGGTGCTATGGACTTTTCTGATGTCTGCCCTTGTTGGTTATTCGCTTTACCAAAGGAAACACCAATGA
AA sequence Show only first row Show all	>Potri.008G130200.3 pacid=42807498 polypeptide=Potri.008G130200.3.p locus=Potri.008G130200 ID=Potri.008G130200.3.v4.1 annot-version=v4.1 MDDEVVQRLFHEGGRDYFQQQPSTSSSSSSSSSSILQSLPLHVSFDHGYYLLVKSLQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCDVISMENY RTGVDDVSDLDSIDFDALVQNLEDLTKGKDTLIPVFDYQQKRRIGSKGIKSISSGVVIVDGTYALHARLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCS LDYLIDSIFPMFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSESPGGHSAYAFHGTAHTDNFIEMYLRPPSASEEARTNDWIKVRQSGIKYYLSLG DQRIVDKHFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASSSVSDGNLSMSLETIDTLSETFIVLRGTDRKTVGAEAMRIGVNGPWITKSYLELILER KGVPRLNTPPLLPNTSTTSNQERAIVAPRPIRTTPNLVNRLEDLSQPWTRSPTKSKMEPMVETWHFTSSDTSHGSSVIDSSTCRDNMKLAPLPDSYDLDR GLLLAVQAIQALLENKGSPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLENYFKSELVKDFKYDDFSSLDLSLLSKNIGDIRNGRRTKVPMFDLETGAR SGFKELEVSEDCGVIIFEGVYALHPEIRISLDLWVAVVGGVHSHLISQVQRDKSRGGCFMSQNEIMMTVFPIFQQHIEPHLVHAHLKIRNDFDPVISPES SSFVLKSNKQVAYQDILKILDPVKLCSSVQNFIDIYLRLPGLPTNGQLADGDCIRVRICDGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQ AVAYIEASAYIYQDGKILIEVDHLQDTPSPYIQIKGVNKEAVAAAGSTLKLDGSYTTKSYLQIILERLPAMERSYSGIHAQQAARLQELVEFIQSQGSSS ASESSPSREAAPLEGIIEDMQFRIKRLERWHTINTVLWTFLMSALVGYSLYQRKHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	0	1
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.002G081600 [exp]	1.00	0.8880	UBP26.1
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	4.47	0.8639
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	4.47	0.8384
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	6.70	0.8251
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	6.92	0.8510
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	7.74	0.8361
AT1G58230			binding (.1)		Potri.002G111000 [exp]	9.16	0.8323
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.002G001000 [exp]	9.79	0.8260
AT5G24350			unknown protein		Potri.012G020000 [exp]	10.48	0.8239
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127300 [exp]	11.22	0.8130

Compare expression of checked genes

Potri.008G130200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.