Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01470 354 / 3e-120 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT5G50650 345 / 8e-117 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 345 / 8e-117 Transducin/WD40 repeat-like superfamily protein (.1) AT3G52190 148 / 1e-40 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT4G00090 45 / 5e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 44 / 0.0001 WD-40 repeat family protein / notchless protein, putative (.1) AT4G04940 44 / 0.0003 transducin family protein / WD-40 repeat family protein (.1) AT5G67320 42 / 0.0008 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G14050 42 / 0.001 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111800 [exp] 593 / 0 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.010G232400 [exp] 172 / 1e-49 AT3G52190 511 / 0.0 phosphate transporter traffic facilitator1 (.1) Potri.008G029200 [exp] 167 / 1e-47 AT3G52190 489 / 2e-173 phosphate transporter traffic facilitator1 (.1) Potri.011G156900 [exp] 52 / 4e-07 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.005G148500 [exp] 47 / 1e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G116900 [exp] 46 / 4e-05 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.019G087200 [exp] 44 / 0.0001 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 44 / 0.0001 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 44 / 0.0002 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035728 [exp] 479 / 5e-169 AT2G01470 332 / 3e-111 SEC12P-like 2 protein (.1) Lus10037313 [exp] 474 / 8e-167 AT2G01470 328 / 2e-109 SEC12P-like 2 protein (.1) Lus10017451 [exp] 166 / 3e-47 AT3G52190 516 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10037923 [exp] 164 / 2e-46 AT3G52190 497 / 2e-176 phosphate transporter traffic facilitator1 (.1) Lus10028830 [exp] 156 / 1e-43 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10038651 [exp] 152 / 4e-42 AT3G52190 484 / 2e-171 phosphate transporter traffic facilitator1 (.1) Lus10033710 [exp] 52 / 5e-07 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10038425 [exp] 52 / 5e-07 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10023381 [exp] 50 / 2e-06 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10031629 [exp] 50 / 2e-06 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G130300.1 pacid=42808392 polypeptide=Potri.008G130300.1.p locus=Potri.008G130300 ID=Potri.008G130300.1.v4.1 annot-version=v4.1 ATGGGAAAGAAGAAAGGGACAGATCCTCCAGCCCTGCAAAAATACGGCGTCCCTCTATATTCAGCTGCTTGGCTTCCGCTTCAATTCCGTCACGAGGACC ACGATTCCTCTAAACAACATGAACAGGACAAGGACAGGGAGGAGATCACCCACGCCTCTGCTTCTTCCTATGAATACTATGTCATTTTGGCCGGTGGTGG CGGTGAAGGCCGCAGCGGCATCCCCAACGCTGTCCTTCTCTCCCGTTTCGATTTCTCCTCCAATTCTCTCTCTCCTCAGCCCGTAGCTAAGCTTAATCTT GGTTCTGATTTGCCCTATAGAATGGTGGTTCACCCCGGTGGAGACGGACTTATTTGTGCATTGCCGAATAGTTGCCGATTTTTTGAGTGGGATGAAGTCG AGGACAATGAAGACCATAAATTGGGCCTTAAATCGTCTGAAAAAGTATTGACACAATTGGAAGATGTTGGACAGCAATTAGCATTGGTCTTTAACAGTGA CAGCTCTGTGCTTGCTGTTGGCGGAGAGGATGGCAATTTAAGGGTTTTCAAGTGGCCTAGCATGGAAATTATTTTCAACGAGGCTCAAGCCCATGCGTCC CTGAAGGACCTGTGTTTCAGCCCTGATGGAAAATTTCTCGTTTCATTGGGAGGTCGTGGCCCTGGTAGAGTCTGGGATGTAACTTCATCAATGGCTGTTG CCTCTTTATCAAAGGAAAACGATGAATTTTTTGCCTCCTGCAGATTTTCTCAAATTAGTGATCAGACTCAGGTTCTGTATGTTGCGGCAATTACAGACAA AGGTTCAAGTATCGTGACATGGAACGCAAGCTCATGGAAGAGAGTGAGCTCAAAGCATGTATTCCGTGAACCAGTTTCTTCCTTTAACATCTCACCTGAT GGAAAGTTTCTTGCAATAGGCACGGCTCAAGGAGATGTGATGCTTATAAATTCAACCAATATGTGTATTCAAACAATGATTAGGAAAGCACATCTTGGCA TAGTAACAGCATTGACATTCTCTCATGATTCAAGGGCTTTGGTCTCTGCATCTATGGACTCAAGTGCAAGGGTGACACTAGTTGAGGACAAGAAATGTGC TGGAGGAGGATCAAGCTTGCGGATCATTATATTCATCATTATAATGGCAATTGTTGTATACTTCTTGAAGAATGAAGGAGTTCTTCCGTTTCTTGGCTAG
AA sequence Show only first row Show all	>Potri.008G130300.1 pacid=42808392 polypeptide=Potri.008G130300.1.p locus=Potri.008G130300 ID=Potri.008G130300.1.v4.1 annot-version=v4.1 MGKKKGTDPPALQKYGVPLYSAAWLPLQFRHEDHDSSKQHEQDKDREEITHASASSYEYYVILAGGGGEGRSGIPNAVLLSRFDFSSNSLSPQPVAKLNL GSDLPYRMVVHPGGDGLICALPNSCRFFEWDEVEDNEDHKLGLKSSEKVLTQLEDVGQQLALVFNSDSSVLAVGGEDGNLRVFKWPSMEIIFNEAQAHAS LKDLCFSPDGKFLVSLGGRGPGRVWDVTSSMAVASLSKENDEFFASCRFSQISDQTQVLYVAAITDKGSSIVTWNASSWKRVSSKHVFREPVSSFNISPD GKFLAIGTAQGDVMLINSTNMCIQTMIRKAHLGIVTALTFSHDSRALVSASMDSSARVTLVEDKKCAGGGSSLRIIIFIIIMAIVVYFLKNEGVLPFLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.008G130300 [exp]	0	1
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.008G189900 [exp]	2.00	0.8310
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.018G064800 [exp]	4.58	0.8126
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Potri.013G005500 [exp]	4.89	0.8141
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G232200 [exp]	5.47	0.7425
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.018G145900 [exp]	14.28	0.7747	Pt-PBA1.1
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.010G098300 [exp]	16.30	0.6858	A1.4
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Potri.010G133800 [exp]	20.12	0.6785	Pt-AAPT1.1
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Potri.002G231800 [exp]	22.29	0.7607
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.013G005600 [exp]	25.09	0.7624
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.012G137800 [exp]	26.49	0.6849	MP2.4

Compare expression of checked genes

Potri.008G130300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.