Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01480 912 / 0 O-fucosyltransferase family protein (.1) AT1G14970 854 / 0 O-fucosyltransferase family protein (.1) AT1G35510 618 / 0 O-fucosyltransferase family protein (.1) AT1G38131 578 / 0 O-fucosyltransferase family protein (.1) AT1G38065 527 / 0 O-fucosyltransferase family protein (.1) AT3G26370 322 / 3e-103 O-fucosyltransferase family protein (.1) AT5G65470 304 / 6e-97 O-fucosyltransferase family protein (.1) AT1G29200 302 / 2e-96 O-fucosyltransferase family protein (.1.2.3) AT4G16650 304 / 3e-96 O-fucosyltransferase family protein (.1) AT4G24530 297 / 5e-94 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111500 [exp] 1070 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 654 / 0 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 555 / 0 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 536 / 0 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 330 / 3e-106 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 329 / 5e-106 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 327 / 6e-105 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 323 / 8e-104 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 319 / 2e-101 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003715 [exp] 892 / 0 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 890 / 0 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 845 / 0 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 841 / 0 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 645 / 0 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 593 / 0 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 493 / 1e-171 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 487 / 2e-168 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 334 / 1e-107 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 330 / 3e-106 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G130600.1 pacid=42806870 polypeptide=Potri.008G130600.1.p locus=Potri.008G130600 ID=Potri.008G130600.1.v4.1 annot-version=v4.1 ATGCACGCGTACAATAGAATACCTAGCAGCGGCCACTCAACACCCTCACCACCTCAATCGCCGCTCCGTTCACCTAGGTACCGTCACGGCAGTGGAGGAG GAGGCCGGTCCAAGCCTGGCCGGTTCACTCCTTCCTCCTATCCGCCTGGACGTAACCTCGCACACCGCCTCGCCTGGTTCCTCCTCTCCGTCCTCCTCCG TCGCCAGGGGATTTTCCTTTTCGCTCCTCTCATTTATATTTCTGGTATGCTTTTGTACATGGGAACGGTGTCGTTCGACGTTGGCCCTATAATTGACCAT AAGCCTGCTCCCGGTTCGGTTTATCGGAGCCCTCAGATTTACGAGAAGCTTCGACCGGAAATGGATGCCGATAATTCATCTGCCGATGCGCTATCAACTG TGTGGAAAAACTCGTATAAAAGTGGTGAGTGGAGGCCGTGCATAAACAAATCTTCCGAAGGCTTACCTGAATCAAATGGTTATATCTATGTTGAGGCAAA TGGTGGCCTGAATCAGCAGAGGACTTCGATATGCAATGCGGTTGCTGTGGCGGGCTATCTTAATGCAACTCTACTCATTCCTAACTTTCATTATCATAGC ATCTGGAGAGATCCTAGCAAATTCAAAGACATCTATGATGAGGACTATTTTATCAGTACATTGGAAAATATTGTAAGGGTGGTTGATAAGATTCCTGGAT ACCTTATGGAGCGTTATGATAACAACATGACTAATGTCCATAACTTTAGAGTAAAAGCATGGGCACCCGTTCAGTATTACAGGGATGTTGTCCTTCCAAG GCTATTAGAAGAAAGGGTCATAAGGATTTCTCCTTTTGCAAATCGCTTGTCATTTGATGTTCCTCCAGCTGTTCAACGGCTTAGATGTTTGGCAAATTAT GAAGCTTTAAGGTTTTCAAATCCCATATTAACTATGGGAGAAACATTGGTTGCGAGAATGAAAGAACGCAGTGCGAGCCATGGTGGAAAGTATGTTTCTG TCCATCTTCGCTTTGAGGAGGACATGGTTGCTTTCTCATGCTGTGTATTTGATGGTGGATGGCAAGAAGCTAAAGACATGAAAGCAGCGAGGGAAAGAGG TTGGAAAGGAAAGTTTACAAAGCCTGGTCGAACTATACGTCCTGGGGCAATTAGGCTCAATGGGAAGTGTCCCCTTACTCCGTTAGAGGTTGGATTGATG CTTAGGGGCATGGGTTTTGATAAAAACACGTATATCTTTTTGGCATCTGGAAAGATTTACAATTCTGAAAAATACATGGCCCCACTGTTGGAAATGTTTC CGAATCTGTTAACTAAAGATATGCTGGCATTGGAAGACGAACTTGATCCGTTCAAGAATTATTCTTCTAGGATGGCTGCGATAGACTACACGGTGTGTCT TCACAGTGAGGTATTTGTGACAACTCAAGGTGGCAACTTCCCCCATTTTTTGATGGGCCATAGAAGATTCTTGTATGGTGGACACTCAAAGACGATCAGG CCAGACAAGCGAAAGTTAGCAATGCTCTTTGATAATCTGAAAATCGATTGGAAGAGCTTCAAGCGACACATGCTGAATATGCGGTCTCACAGTGATTCTA AAGGATTTGAAATCAAAAGGCCAAATGACTCCATATATTCCTTTCCGTGCCCAGATTGCATGTGCCATGTTAACAGAACAGAAGATTCAAGATCATCTTC AGCTACGTGA
AA sequence Show only first row Show all	>Potri.008G130600.1 pacid=42806870 polypeptide=Potri.008G130600.1.p locus=Potri.008G130600 ID=Potri.008G130600.1.v4.1 annot-version=v4.1 MHAYNRIPSSGHSTPSPPQSPLRSPRYRHGSGGGGRSKPGRFTPSSYPPGRNLAHRLAWFLLSVLLRRQGIFLFAPLIYISGMLLYMGTVSFDVGPIIDH KPAPGSVYRSPQIYEKLRPEMDADNSSADALSTVWKNSYKSGEWRPCINKSSEGLPESNGYIYVEANGGLNQQRTSICNAVAVAGYLNATLLIPNFHYHS IWRDPSKFKDIYDEDYFISTLENIVRVVDKIPGYLMERYDNNMTNVHNFRVKAWAPVQYYRDVVLPRLLEERVIRISPFANRLSFDVPPAVQRLRCLANY EALRFSNPILTMGETLVARMKERSASHGGKYVSVHLRFEEDMVAFSCCVFDGGWQEAKDMKAARERGWKGKFTKPGRTIRPGAIRLNGKCPLTPLEVGLM LRGMGFDKNTYIFLASGKIYNSEKYMAPLLEMFPNLLTKDMLALEDELDPFKNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRFLYGGHSKTIR PDKRKLAMLFDNLKIDWKSFKRHMLNMRSHSDSKGFEIKRPNDSIYSFPCPDCMCHVNRTEDSRSSSAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01480			O-fucosyltransferase family pr...		Potri.008G130600 [exp]	0	1
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	3.16	0.8797
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Potri.011G102100 [exp]	4.00	0.8267
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	5.74	0.8110	Pt-XF1.2
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.017G059200 [exp]	7.93	0.7905
					Potri.011G073666 [exp]	11.31	0.8409
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.004G018100 [exp]	11.74	0.7580	TOM1.2
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	15.74	0.8138
AT4G04940			transducin family protein / WD...		Potri.018G148066 [exp]	15.87	0.7870
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.010G034800 [exp]	19.07	0.7895
AT1G32260			unknown protein		Potri.001G138200 [exp]	19.41	0.7869

Compare expression of checked genes

Potri.008G130600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.