Plant FIBer expression Database

Potri.008G130800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01505 45 / 2e-07 CLE16 CLAVATA3/ESR-RELATED 16 (.1)
AT1G70895 40 / 1e-05 CLE17 CLAVATA3/ESR-RELATED 17 (.1.2)
AT5G12235 36 / 0.0008 CLE22 CLAVATA3/ESR-RELATED 22 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G111200
[exp]
94 / 1e-26 AT2G01505 45 / 4e-07 CLAVATA3/ESR-RELATED 16 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G130800.1 pacid=42808788 polypeptide=Potri.008G130800.1.p locus=Potri.008G130800 ID=Potri.008G130800.1.v4.1 annot-version=v4.1
ATGATATTTCATCGTAAAGTTGGCGTAGCAGCAGCAAGAGGTAGAAGATATTCCGGAGCTAAAGCTGCAATTATCTTCTTATTCTGGATTCTGTTAATTC
TTGCTCAGTTAGGTTTGCTTATAGCTTTTGGTCATGAAGAAACTGGTAAGCTGGTGAAGTCTCTGCCAAGAAAAGCCAGGTTTTTTGAGACACGGTTTCA
TGCACCTCCAAGCCAAGATCAGCCTTTGGACATTGATAAAGGAGATCCAGACACAGTATACGAAGATGATAAAAGGATAATTCATACAGGTCCTAATCCT
CTCCACAACTAG
AA sequence
>Potri.008G130800.1 pacid=42808788 polypeptide=Potri.008G130800.1.p locus=Potri.008G130800 ID=Potri.008G130800.1.v4.1 annot-version=v4.1
MIFHRKVGVAAARGRRYSGAKAAIIFLFWILLILAQLGLLIAFGHEETGKLVKSLPRKARFFETRFHAPPSQDQPLDIDKGDPDTVYEDDKRIIHTGPNP
LHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01505 CLE16 CLAVATA3/ESR-RELATED 16 (.1) Potri.008G130800
[exp]
0 1
AT5G04820 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAM... Potri.006G205500
[exp]
5.56 0.9958
AT3G16370 GDSL-like Lipase/Acylhydrolase... Potri.001G191400
[exp]
8.30 0.9948
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.004G064500
[exp]
8.83 0.9951
AT1G74670 GASA6 GA-stimulated Arabidopsis 6, G... Potri.006G044400
[exp]
14.83 0.9389
Potri.002G252200
[exp]
15.65 0.9927
AT1G54820 Protein kinase superfamily pro... Potri.005G036600
[exp]
16.88 0.9936
AT4G23400 PIP1D, PIP1;5 plasma membrane intrinsic prot... Potri.009G128500
[exp]
16.97 0.9933
AT3G55090 ABCG16 ATP-binding cassette G16, ABC-... Potri.010G213400
[exp]
17.66 0.9751 2
AT4G33790 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIF... Potri.009G144900
[exp]
18.16 0.9920
AT1G02050 LAP6 LESS ADHESIVE POLLEN 6, Chalco... Potri.002G141400
[exp]
18.22 0.9564 CHSL4

Potri.008G130800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.