Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70820 965 / 0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) AT5G17530 397 / 2e-131 phosphoglucosamine mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223000 [exp] 398 / 6e-131 AT5G17530 865 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.008G039200 [exp] 396 / 1e-130 AT5G17530 872 / 0.0 phosphoglucosamine mutase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015835 [exp] 934 / 0 AT1G70820 901 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10009327 [exp] 502 / 2e-176 AT1G70820 478 / 3e-167 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10023518 [exp] 371 / 3e-120 AT5G17530 896 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10020414 [exp] 346 / 1e-115 AT1G70820 344 / 2e-115 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10040402 [exp] 302 / 2e-94 AT5G17530 778 / 0.0 phosphoglucosamine mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [poplar] [flax] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [poplar] [flax] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [poplar] [flax] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Potri.008G131400.1 pacid=42806321 polypeptide=Potri.008G131400.1.p locus=Potri.008G131400 ID=Potri.008G131400.1.v4.1 annot-version=v4.1 ATGGCTTCTACCTCGACATCCTCGATATCATTGCGAAACAATGCTCCAGGAACAAGGTTCCCCTCATCTACAACATCAAAACTACTGCACTCTAATCTCA AATTTCCACTTTTAATGCCTGCAACAAAAGCTACAGGCATAAAATCTTCAAGTGCCACAAGGTACAATGAAGCTGTAATTGATGAAGAAATGGACAAGAT TAGGAGGCTCCAAAATGGGTCCGATGTTCGTGGGGTGGCATTGCAAGGGGAGAAGGGTAGAACAGTGGATCTTTCTCCTCCGGCCGTGGAAGCCATTGCA GAGAGTTTTGGCGAATGGGTTATCAATGGCTTGGAAAAGGAAAAAGGTCGTGTTGTTGAGAATGTTAGGGTGTCACTAGGCAGAGACCCACGACTATCAG GAGCTTCTTTGAGTGTAGCTGTGTTTTCAGGTCTTGTTCGTGCTGGTTGTTTGGCGTTTGATATGGGACTTGCCACCACTCCAGCTTGTTTTATGAGTAC TTTGTTAACTCCATTTGCCTATGATGCATCCATAATGATGACAGCATCACACTTGCCATACACTCGTAATGGACTCAAATTTTTCACCAGGAGAGGGGGG CTAACCTCGCCCGAGGTGGAGGAGATTTGCGGTAAAGCTGCGCGTAAGTATGCAAATAGGCTTGCAAAAGTTTCTACCATGCTTAAGACTCCACCAGAAA GAGTTGATTTCATGAGCACCTATGCAAAGCATCTCCGGAATATAATCAAGGAGAGAGTGAACCATCCCTTTCACTACGACACTCCCCTCAAAGAATTTCA GATAATTGTAAACGCCGGAAATGGATCAGGAGGTTTCTTCACATGGGATGTGCTTGACAAGCTTGGTGCAGAAACCTTTGGCTCGCTACACTTAAACCCA GATGGAATGTTCCCAAACCACATCCCGAACCCCGAGGACAAGATTGCCATGGCACTAACTAGAGCTGCTGTGCTAGAAAATTCAGCTGATCTTGGAATTG TTTTCGACACTGATGTGGACCGAAGTGGGGTAGTTGACAAGGAAGGAAACCCGATTAATGGTGACAGGCTTATAGCACTCATGTCTGCTATCGTATTGAG GGAACATCCTGGAACTACTATAGTTACCGATGCGCGTACAAGCATGGCACTGACAAGGTTTATTATTGATAGAGGAGGTCAACATTGCTTGTATCGAGTT GGTTACCGGAATGTTATTGATAAGGGTGTCCAACTTAATAAAAATGGAATTGAAACACATCTGATGATGGAAACTTCTGGACATGGTGCTCTTAAAGAGA ATTATTTCCTAGACGATGGGGCTTATATGGTGGTAAAAATCATCATCGAAATGGTACGTATGAAACTAGCTGGATCAGATGAAGGAATCGGTAGCCTCAT AAAAGATCTTGAAGAACCATTAGAATCTGTAGAGCTAAGGATGAACATCATCTCTGAGCCTAGGCATGCTAAGGCAAGAGGTATTGATGCAATCGAGACA TTCCGAAGCTATGTTGAGGAGGGACGAATTGAAGGCTGGGAATTGGATTCCTGTGGAGACTGTTGGGTAGCCGATGGATGCCTCGTCGACTCAAATGACG ATCCAGCAGCTGTTGATGCTCATATGTACAGGGCCAAAGTTTCTGATGAAAAACTTGGACAACATGGTTGGATACACCTGCGTCAGAGTATTCACAATCC AAATATTGCAGTGAATATGCAATCAATGGCGCCTGGGGGTTGTCTATCTATGACAAAAACTCTGAGAGACAAGTTTCTCGTGGCAAGTGGAATGGACAAG ATCCTCGATGTTACTCAGATCGACAAGTACGCTAGAACTGGACTTGTAAAATAA
AA sequence Show only first row Show all	>Potri.008G131400.1 pacid=42806321 polypeptide=Potri.008G131400.1.p locus=Potri.008G131400 ID=Potri.008G131400.1.v4.1 annot-version=v4.1 MASTSTSSISLRNNAPGTRFPSSTTSKLLHSNLKFPLLMPATKATGIKSSSATRYNEAVIDEEMDKIRRLQNGSDVRGVALQGEKGRTVDLSPPAVEAIA ESFGEWVINGLEKEKGRVVENVRVSLGRDPRLSGASLSVAVFSGLVRAGCLAFDMGLATTPACFMSTLLTPFAYDASIMMTASHLPYTRNGLKFFTRRGG LTSPEVEEICGKAARKYANRLAKVSTMLKTPPERVDFMSTYAKHLRNIIKERVNHPFHYDTPLKEFQIIVNAGNGSGGFFTWDVLDKLGAETFGSLHLNP DGMFPNHIPNPEDKIAMALTRAAVLENSADLGIVFDTDVDRSGVVDKEGNPINGDRLIALMSAIVLREHPGTTIVTDARTSMALTRFIIDRGGQHCLYRV GYRNVIDKGVQLNKNGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMKLAGSDEGIGSLIKDLEEPLESVELRMNIISEPRHAKARGIDAIET FRSYVEEGRIEGWELDSCGDCWVADGCLVDSNDDPAAVDAHMYRAKVSDEKLGQHGWIHLRQSIHNPNIAVNMQSMAPGGCLSMTKTLRDKFLVASGMDK ILDVTQIDKYARTGLVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70820			phosphoglucomutase, putative /...		Potri.008G131400 [exp]	0	1
AT5G05280			RING/U-box superfamily protein...		Potri.019G130100 [exp]	2.23	0.9649
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456300 [exp]	2.82	0.9600
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	3.46	0.9647
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	4.47	0.9578
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128600 [exp]	5.47	0.9574
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	6.32	0.9517
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Potri.015G012400 [exp]	8.83	0.9167
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	9.38	0.9470
AT1G69360			Plant protein of unknown funct...		Potri.018G020800 [exp]	11.74	0.9114
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	11.95	0.9448	PtrPHT1-9

Compare expression of checked genes

Potri.008G131400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.