Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17980 202 / 5e-67 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 202 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G70790 201 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G01540 200 / 2e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70810 197 / 3e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G73580 190 / 2e-62 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G37740 182 / 2e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70800 175 / 1e-56 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G23140 174 / 2e-56 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 169 / 5e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110900 [exp] 265 / 6e-92 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.012G047100 [exp] 207 / 4e-69 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.017G125500 [exp] 202 / 2e-67 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 196 / 8e-65 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G372000 [exp] 128 / 2e-36 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 128 / 3e-36 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.003G198301 [exp] 115 / 1e-30 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 115 / 1e-30 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.006G004600 [exp] 107 / 8e-30 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021775 [exp] 206 / 3e-68 AT1G70810 209 / 6e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009684 [exp] 197 / 3e-64 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 193 / 3e-62 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10033585 [exp] 183 / 9e-60 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017629 [exp] 181 / 8e-59 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001594 [exp] 181 / 2e-58 AT3G17980 187 / 7e-61 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042002 [exp] 180 / 4e-58 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10034591 [exp] 172 / 1e-55 AT1G70790 181 / 3e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10018005 [exp] 167 / 3e-53 AT3G17980 222 / 1e-74 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003710 [exp] 150 / 5e-47 AT1G48590 158 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.008G131500.6 pacid=42805981 polypeptide=Potri.008G131500.6.p locus=Potri.008G131500 ID=Potri.008G131500.6.v4.1 annot-version=v4.1 ATGGACAGCTTTCTTGGCCTTCTCAGAATCCGGGTGAAACGCGGCGTAAATCTTGCCGTTCGCGACCTTGGCTCCAGTGATCCTTATGTTGTCATCACCA TGGGAAACCAGAAATTGAAGACTCGAGTGGTGAAAAAAAACTGCAATCCAGTGTGGAATGAGGAGCTTACTCTTTCAATTACAGATCTCAATGTTCCAAT CAATTTAACAGTTTTTGACAAAGACACGTTCACTGTGGATGACAAAATGGGTGAAGCAGGCATAGACCTCCAACCATATATCGCAAGTCTAAAGATGGGC CTGCAAAATCTCCCGAAAGGTTGTGTGGTCTCAAGAGTTCAGCCAAGCCAGAACAACTGCCTTGCTGATGAGAGCTGCATTGTTTGGGATGATGGAAAAC TCCACCAAGACATGATTCTCAGATTAAGAAATGTAGAGTCTGGTGAAGTTACGATTCAAATCGAGTGGATTGATGTTCCAGGTTGTCGAGGATTGAAAAC TGAAGGTACGGGCTAA
AA sequence Show only first row Show all	>Potri.008G131500.6 pacid=42805981 polypeptide=Potri.008G131500.6.p locus=Potri.008G131500 ID=Potri.008G131500.6.v4.1 annot-version=v4.1 MDSFLGLLRIRVKRGVNLAVRDLGSSDPYVVITMGNQKLKTRVVKKNCNPVWNEELTLSITDLNVPINLTVFDKDTFTVDDKMGEAGIDLQPYIASLKMG LQNLPKGCVVSRVQPSQNNCLADESCIVWDDGKLHQDMILRLRNVESGEVTIQIEWIDVPGCRGLKTEGTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.008G131500 [exp]	0	1
					Potri.002G135900 [exp]	1.41	0.8095
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123100 [exp]	6.48	0.7645
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	8.48	0.7875
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Potri.002G041200 [exp]	9.05	0.7009	LBD16.2
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.001G460400 [exp]	9.53	0.7627
AT5G15080			Protein kinase superfamily pro...		Potri.017G077300 [exp]	9.64	0.7973
AT4G39235			unknown protein		Potri.002G057100 [exp]	12.84	0.7319
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.018G002801 [exp]	13.71	0.6964
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.009G095500 [exp]	14.96	0.7520	ZOG1.18
AT4G02040			unknown protein		Potri.008G198000 [exp]	18.16	0.7825

Compare expression of checked genes

Potri.008G131500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.