Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23180 821 / 0 ARM repeat superfamily protein (.1) AT2G44900 56 / 9e-08 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT3G46510 56 / 1e-07 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G23140 56 / 2e-07 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G60350 54 / 4e-07 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT3G54850 54 / 6e-07 ATPUB14 plant U-box 14 (.1) AT2G28830 53 / 9e-07 AtPUB12 PLANT U-BOX 12 (.1) AT1G23030 52 / 1e-06 PUB11 ARM repeat superfamily protein (.1) AT1G77460 51 / 5e-06 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) AT1G68940 49 / 2e-05 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110200 [exp] 1373 / 0 AT1G23180 836 / 0.0 ARM repeat superfamily protein (.1) Potri.002G037700 [exp] 59 / 1e-08 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G137100 [exp] 58 / 3e-08 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.009G029600 [exp] 56 / 7e-08 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.007G051000 [exp] 56 / 1e-07 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.014G046000 [exp] 55 / 2e-07 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.005G144700 [exp] 55 / 3e-07 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G226500 [exp] 54 / 5e-07 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.008G128600 [exp] 53 / 7e-07 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022919 [exp] 62 / 1e-09 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 62 / 1e-09 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10028197 [exp] 60 / 8e-09 AT2G44900 1144 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10016565 [exp] 58 / 3e-08 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10042900 [exp] 56 / 1e-07 AT2G44900 1321 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10040834 [exp] 56 / 1e-07 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10019308 [exp] 54 / 9e-07 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 53 / 1e-06 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039470 [exp] 46 / 0.0001 AT5G40140 438 / 3e-148 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10033249 [exp] 45 / 0.0002 AT3G54850 340 / 3e-113 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF05804 [poplar] [flax] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Potri.008G131900.1 pacid=42806575 polypeptide=Potri.008G131900.1.p locus=Potri.008G131900 ID=Potri.008G131900.1.v4.1 annot-version=v4.1 ATGATGGCTTTAACAATCCCAACTCACTCCAGTCTCAACCTCCCTTCTCTCCAATACACTCCCTGCAATACCTTCTTGCAAGTTATTAGACCCACAAGAA GAAAACCATCAGCCTCTTCCCATTTTCATATTAACAATAAAAACTCCAACTTCAACCCCAAATTATGCTCCAAAAGCGCAGTGCTTACCAGGGCCAGTGC TGATGGCGGTGGAAGTGGTGCCGTTGATGCCAATCCACAACAAAAGAATATTGAGGACTCAAAATGTAGCTCATCTAGTTTCAGTGATAACTATGTGGCC TTGTTTGTTCGGATGCTTGGGCTAGATAACGATCCTCTTGATAGAGAACAAGCAATAGTGGCACTGTGGCAATATTCACTTGGAGGAAAGAAGTGCATTG ATAACATCATGCAGTTTCAGGGATGCATCAATCTCATTGTAAACCTTCTTCAGTCGGAGTTGAGCTCTGCATGCGAAGCATCTGCTGGCCTCCTACGATC AATATCTTCAGTCAATGTATACAGAGATGTAGTAGCAGAAAGTGGAGCGATTGAAGAGATAACTCGTTTGCTCAGTCAACCTTCTTTGACTCCTCAGGTG ATGGAGCAAAGTATATGCATTCTTTGGAACTTGTCTGTGGATGAGAAGCTCAGAGTGAAAATTGCTAACCCTGATGTCCTACCTTTACTGATTAAGTCCC TGAAAGATGAGGACATTAGAGTGAAGGAAGCAGCGGGAGGAGTATTGGCAAACTTGACATTGACCCACTCCAACCACAACATCATGGTTGAAGCAGGGGT TATTCCTAAGTTGGCGAATTTCTTAAAATCTGCGGTTGATGAAGAATCCAAGGTCATTAGGAAGGAAGCTAGAAACGCTCTGGTGGAACTTTGTAAGAAT CAATACTATAGAATCCTTGTCATGGAGGAAGGTCTAGTTCTTGTGCCATTAATCGGCGCAGCTGCATATAGGTCCTTTATTCCAGCTTTGCATTCATGGC CAAGCCTACCTGATGGTTCAAAAATTGAACATACTTTTAAAGGTCCTTCAAGGTTTGGTGCTTCTGAATTGCTCCTCGGATTAAATATTGATGACAAGAA TGCAAACCTTGAGGAAGCTAAGATGAAAGCAATAATTGGACGATCTAAGCAACAATTCCTTGCTCGTACAGGGGCTATAGAAGTGGAAGACACAAAATTG TCTCAAAGTGGATCATCTAAAACTAGGCAATTTACAGTTTTGCCATGGATAGATGGGGTGGCCAGATTGGTTTTAATTCTTGAACTTGAAGATGAGTCAG CCATTTGCAGAGCTGCAGAGTCAATTGCTGATGCATCTATCAATGAACATTTGAGAAATTCATTTAAGGAAGCTGGAGCAGTCAAGAACTTAATTCAGCT CTTGGACCATAACAATGATGCTATCAGACTTGCTGCTGTTGGCGCTTTGGAGAAGTTATCTATCAGCAATGCAGTTTGTGAGACAATTGAAGCTGAAGGT GTTATGGCTCCCTTGATCAACATCTTAAAGAACTCAGAGATGTCTGAAAGCATGATGGAAAAGGCCTTGAATTTACTGTCTCGAATCTTAGACCCTAATA GGGAAATGAAATTGAAGTTTTATGATGGACCGGTTAATGGATTTAAAAAGGAATTGGATGCAGCAAGAGGTGATGATGCTTCTACTGGATTAAGTAGAAA AGTTGATGAAATGCTGAAGTCAAAAACAAATACCAGACGAGACGTGTTGGACCTGGATGTCGTTGCTCGCCTAGTTGATATGCTAAAGCACCCATCCCCA GAGCTACAAAGAAAAGCAGCTTCTGTCCTTGAGTTTGTAGCAATTAGTGACTCAAGCATGGACACAGTCATCTCAGCGAATATCGAATCTGGTCTGCTTG CTATTTTCCAACAAATAGAATTGAACGAACTGGAATCTGATGATGACAGTCAGCAGACAGAAATACATGCCGTTCAAGTTGAAGAGGTTGGTCTTGCTAT ATCTTCAGCTTCCCGGTTACTCACGAAGCTTCTTGATTTGGAACTGTTTCGACACAATATAAACCCCTCCCTTTTCACTAAGTTGCTTCGTAAAATCCTG AAATCAAACATTCCTCTTCAGTACAAAGATTGGACTGCTGCTTGCCTTGTTAAACTCGGCTCTCTCTACGGTCCTACTCCCATCCTTGAATTTGAGAATC CAATCAACATGGAAGTTACCCTTTACGAGAAGATACCAAGACTAATAGACCAAATGAGATCCTCTTTCTCTTTAGACGCACAAGAAACTGCAGTTTTAGA ACTCAACAGGATAATTTCTGAGGGAATGGTAGATGCCACTCGAGCTGTTGCTTCTGATGGTGGAATATTTCCATTGGTGAAGCTAATAGAGGGAGGAAGT GAGAGGGCGGTCGAAGCAGCCATATGTATCCTATATAATCTAAGCATGGATAATGAAAATCATGCTGCAATTCTAGCTGCTGGGGCGGTGCCAGCTCTGA GGAGAATTATCCTGTCAGAAAGATCACAATGGAAACGAGCTTTGCGTTTGCTGAGGAATTTACCTACATGA
AA sequence Show only first row Show all	>Potri.008G131900.1 pacid=42806575 polypeptide=Potri.008G131900.1.p locus=Potri.008G131900 ID=Potri.008G131900.1.v4.1 annot-version=v4.1 MMALTIPTHSSLNLPSLQYTPCNTFLQVIRPTRRKPSASSHFHINNKNSNFNPKLCSKSAVLTRASADGGGSGAVDANPQQKNIEDSKCSSSSFSDNYVA LFVRMLGLDNDPLDREQAIVALWQYSLGGKKCIDNIMQFQGCINLIVNLLQSELSSACEASAGLLRSISSVNVYRDVVAESGAIEEITRLLSQPSLTPQV MEQSICILWNLSVDEKLRVKIANPDVLPLLIKSLKDEDIRVKEAAGGVLANLTLTHSNHNIMVEAGVIPKLANFLKSAVDEESKVIRKEARNALVELCKN QYYRILVMEEGLVLVPLIGAAAYRSFIPALHSWPSLPDGSKIEHTFKGPSRFGASELLLGLNIDDKNANLEEAKMKAIIGRSKQQFLARTGAIEVEDTKL SQSGSSKTRQFTVLPWIDGVARLVLILELEDESAICRAAESIADASINEHLRNSFKEAGAVKNLIQLLDHNNDAIRLAAVGALEKLSISNAVCETIEAEG VMAPLINILKNSEMSESMMEKALNLLSRILDPNREMKLKFYDGPVNGFKKELDAARGDDASTGLSRKVDEMLKSKTNTRRDVLDLDVVARLVDMLKHPSP ELQRKAASVLEFVAISDSSMDTVISANIESGLLAIFQQIELNELESDDDSQQTEIHAVQVEEVGLAISSASRLLTKLLDLELFRHNINPSLFTKLLRKIL KSNIPLQYKDWTAACLVKLGSLYGPTPILEFENPINMEVTLYEKIPRLIDQMRSSFSLDAQETAVLELNRIISEGMVDATRAVASDGGIFPLVKLIEGGS ERAVEAAICILYNLSMDNENHAAILAAGAVPALRRIILSERSQWKRALRLLRNLPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23180			ARM repeat superfamily protein...		Potri.008G131900 [exp]	0	1
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	1.00	0.9828
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.006G205000 [exp]	2.00	0.9817
AT1G36320			unknown protein		Potri.002G091000 [exp]	2.44	0.9814
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Potri.011G010300 [exp]	4.00	0.9755
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	4.24	0.9724
					Potri.013G101050 [exp]	4.24	0.9603
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Potri.001G103300 [exp]	4.58	0.9692	Pt-PDE316.1
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.010G042500 [exp]	6.70	0.9743
AT5G15390			tRNA/rRNA methyltransferase (S...		Potri.004G122300 [exp]	7.41	0.9663
AT3G09250			Nuclear transport factor 2 (NT...		Potri.016G105600 [exp]	7.93	0.9679

Compare expression of checked genes

Potri.008G131900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.