Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01600 749 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 731 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 548 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 546 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 453 / 2e-154 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 243 / 2e-72 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 221 / 5e-64 ENTH/ANTH/VHS superfamily protein (.1.2) AT4G02650 214 / 8e-62 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 186 / 5e-51 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 150 / 2e-38 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110000 [exp] 985 / 0 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 587 / 0 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 573 / 0 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 463 / 2e-158 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 463 / 3e-158 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 454 / 8e-155 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 253 / 7e-81 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 264 / 8e-81 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 228 / 1e-66 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013469 [exp] 860 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 849 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 837 / 0 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 827 / 0 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 551 / 0 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 465 / 7e-159 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 464 / 2e-158 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 324 / 3e-104 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 290 / 1e-89 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10019402 [exp] 219 / 1e-63 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.008G132100.4 pacid=42807625 polypeptide=Potri.008G132100.4.p locus=Potri.008G132100 ID=Potri.008G132100.4.v4.1 annot-version=v4.1 ATGGGCACACTCCAGACATGGCGAAAAGCCTATGGCGCTCTCAAAGATTCCACCAAAGTCGGTCTTGCTCATGTCAACAGCGATTATGCGGAATTGGACG TGGCCATAGTCAAAGCAACTAACCACGTTGAGTGTCCTCCAAAAGAGCGCCATCTTAGAAAAATCTTGGCTGCTACGTCAGCGATTCGGCCTCGAGCTGA TGTTGCTTATTGCATTCATGCTCTTTCCCGCCGATTGGCCAAAACCCATAACTGGACGGTAGCTTTGAAAATACTGATTGTGATCCATAGATTATTAAGA GAGGGTGATCCTACTTTCAGAGAAGAACTTCTGAATTTCTCTCAGAGAGGGCGCATCCTCCAACTTTCTAATTTCAAGGATGATTCAAGTCCTATTGCTT GGGATTGCTCTGCTTGGGTGCGTACATATGCACTTTTTTTGGAGGAACGACTTGAATGCTTTAGAATTCTAAAGTATGATATTGAAGCAGAGCGTCTTCC AAGACCTGCCCAAGGGCAGGATAAGCAGGGCTACAGCCGAACTAGGGACTTAGACAGTGAAGATCTGCTTGAACAGTTGCCTGCTTTACAGCAGTTGTTG TATCGTCTCGTTGGCTGCCGGCCAGAAGGCGCTGCGGTTGGCAATTATGTTATACAGTATGCTCTGGCTCTGGTATTGAAGGAGAGCTTTAAAATATATT GTGCTATTAATGACGGGATCATCAATCTTGTGGATAAGTTTTTTGAGATGCCAAGACATGAAGCAATCAAAGCCCTTGATATCTACAAACGAGCCGGTCA GCAGGCTGGTAACCTTTCTGATTTCTATGACATTTGCAAAGGATTGGAACTTGCTAGGAATTTCCAGTTTCCTGTTTTGAGAGAGCCTCCACAATCCTTT CTTACAACTATGGAAGAGTATATCAGAGAGGCACCACGTGTTGTTTCTGTTCCTAGTGAGGCATTGCTTCAATTGACATACAGACCAGAAGAAGGTCCTT CTGAAGATGCCAAATCATCTGGCGATGAACTTGAGCCACCTCCTTCAGATGATGTTGCTGTCTCCAATGTTGAGATCGCCCCTCCTGTTCCTACAACCGC TCCTCAGAACAGCATAGACACTGGAGACTTGCTGGGATTGGATTATGGAACTCCTAATGCATCTACCATTGAGGAAAGCAATGCTTTGGCTCTGGCTATA GTTCCTTCTGAATCAGATGTTGCACCGACATTTAACTCTGTTGCTGGTCAAGCAAAAGATTTTGATCCTACTGGATGGGAACTTGCCCTGGTCACTACTC CAAGCAGCAATATTTCTGCCACTAATGAGAGGCAATTGGCTGGCGGCTTGGACTCGCTCACTCTGAACAGTTTGTATGATGAAGGAGCATATCGAGCTGC CCGGCGGCCTGTTTATGGAGCGCCAGCCCCCAATCCATTTGAGATACAAGATCCATTTGCTTTGTCAAACAGCATTGCTGCCCCTCCTTCAGTCCAAATG GCAGCAATGACTCAACAGCCGCACAATCCTTTTGGTCCATATCAACCTACCTACCCACAACCACAGCATCAACAAAATATGATGATGAGCCATGCAAATC CTTTTGGTGATGCAGGGTTTGGCGCATTTCATGCACATCCTATGGCACATCCTCAGACTAATAATCCCTTCGGAAGCACAGGCCTTCTGTAA
AA sequence Show only first row Show all	>Potri.008G132100.4 pacid=42807625 polypeptide=Potri.008G132100.4.p locus=Potri.008G132100 ID=Potri.008G132100.4.v4.1 annot-version=v4.1 MGTLQTWRKAYGALKDSTKVGLAHVNSDYAELDVAIVKATNHVECPPKERHLRKILAATSAIRPRADVAYCIHALSRRLAKTHNWTVALKILIVIHRLLR EGDPTFREELLNFSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPAQGQDKQGYSRTRDLDSEDLLEQLPALQQLL YRLVGCRPEGAAVGNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALDIYKRAGQQAGNLSDFYDICKGLELARNFQFPVLREPPQSF LTTMEEYIREAPRVVSVPSEALLQLTYRPEEGPSEDAKSSGDELEPPPSDDVAVSNVEIAPPVPTTAPQNSIDTGDLLGLDYGTPNASTIEESNALALAI VPSESDVAPTFNSVAGQAKDFDPTGWELALVTTPSSNISATNERQLAGGLDSLTLNSLYDEGAYRAARRPVYGAPAPNPFEIQDPFALSNSIAAPPSVQM AAMTQQPHNPFGPYQPTYPQPQHQQNMMMSHANPFGDAGFGAFHAHPMAHPQTNNPFGSTGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.008G132100 [exp]	0	1
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G237700 [exp]	8.06	0.8890
AT3G09085			Protein of unknown function (D...		Potri.016G110900 [exp]	12.36	0.8540
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.015G048100 [exp]	13.67	0.8507
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	15.96	0.8613
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	18.97	0.8315
AT2G37195			unknown protein		Potri.016G090000 [exp]	19.36	0.8512
AT3G51325			RING/U-box superfamily protein...		Potri.005G109600 [exp]	20.09	0.8629
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	21.77	0.8708
					Potri.001G022601 [exp]	23.95	0.8569
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	26.77	0.8645

Compare expression of checked genes

Potri.008G132100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.