Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70740 499 / 1e-176 Protein kinase superfamily protein (.1.2) AT4G23180 340 / 4e-111 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G11530 337 / 5e-110 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23200 335 / 2e-109 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G11490 334 / 2e-109 CRK33 cysteine-rich RLK (RECEPTOR-like protein kinase) 33 (.1) AT4G23140 330 / 2e-107 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23280 330 / 2e-107 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 330 / 2e-107 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G00970 328 / 2e-106 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G00960 317 / 3e-106 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109700 [exp] 604 / 0 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G026350 [exp] 340 / 3e-111 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024632 [exp] 330 / 4e-111 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 336 / 2e-109 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 335 / 3e-109 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.011G028400 [exp] 335 / 5e-109 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024800 [exp] 333 / 2e-108 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 332 / 7e-108 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 331 / 9e-108 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001595 [exp] 516 / 0 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003711 [exp] 516 / 0 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10009631 [exp] 320 / 1e-106 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10018382 [exp] 328 / 2e-106 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 326 / 1e-105 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10033752 [exp] 309 / 4e-103 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10018379 [exp] 316 / 7e-102 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10016871 [exp] 320 / 8e-102 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031199 [exp] 323 / 2e-101 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10024064 [exp] 319 / 2e-101 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G132300.1 pacid=42806655 polypeptide=Potri.008G132300.1.p locus=Potri.008G132300 ID=Potri.008G132300.1.v4.1 annot-version=v4.1 ATGACGAAGCCCAATAATTTCTTGCAGAATCTGATGAAGCCTTTCAAGCTCAACTCAAGCAAAGAGGGACCAGAAGAGGAGGACTTGGAGAAGATTGCTG AACAGGAACAGAAGCAGTTTTCTTTTGAGACTTTGCTCTCTGCTACCAAAGATTTCCACCCAACTCACAAGCTCGGTGAAGGTGGATTTGGACCTGTATA CAAGGGGAAGTTGGATGATGGGAGAGAGATTGCAGTGAAGAAGCTGTCTCACAGTTCAAATCAGGGGAAGAAAGAATTCATGAATGAGGCAAAGCTATTA GCACGAGTCCAGCATCGAAATATTGTAAATTTGTTAGGATATTGTGCACATGGTGTGGAAAAGCTACTGGTTTACGAGTATGTTGCCAATGAGAGCCTTG ACAAGCTTCTGTTCAAATCTGACAAAAGAGGACAGCTTGATTGGAAGACGAGATATAATATAATAATTGGCATTGCTCGGGGTTTGCTTTACCTTCATCA GGATTCTCACAGTTGCATCATCCACCGTGACATCAAGGCAAGCAATATTTTACTGGATGACAAATGGGTTCCTAAGATTGCTGATTTTGGCATGGCCCGT CTGTTCCCGGAAGATCAAACACATGTCAACACCCGTGTTGCTGGTACCAACGGGTATATGGCTCCAGAGTATGTCATGCATGGACATTTATCGGTGGGGG CAGACGTATTTAGCTTTGGGGTTTTGGTTCTGGAACTGATCAGCGGCCAAAGAAATTCAACATTTAGTCAACAGCATGTTGAAGCACAGAATCTACTTGA TTGGGCATATAAGCACCACAAGAAAGATAGGAGTTTGGAGATTATGGACCCAGAATTAGCATCCTCAGCAGTCACCGAAGAGGTGAAAACATGTATTCAT ATAGGGCTGCTATGCACACAAGGTGATCCACAGTCGCGGCCGCATATGCGACGTATTGTTGTCCTGTTGTCAAGGAAACCTAGCAATCTAGAAGAACCAG GCAGACCTGGAGTTCCTGGTTCTAGATATAGGAGATCTCGAAGGCCAGGAGGAATGTCCTCAACTGCTGGAACATTCGGTACTGCTGGAACATTCGGTGA ATCTGATTCCCGTACATTTAATTCAAGCTCAAATACTAAAACTGCCACCGCGTCTACCTCAGCTTCGAGAGAAACGCCCCCTTGA
AA sequence Show only first row Show all	>Potri.008G132300.1 pacid=42806655 polypeptide=Potri.008G132300.1.p locus=Potri.008G132300 ID=Potri.008G132300.1.v4.1 annot-version=v4.1 MTKPNNFLQNLMKPFKLNSSKEGPEEEDLEKIAEQEQKQFSFETLLSATKDFHPTHKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFMNEAKLL ARVQHRNIVNLLGYCAHGVEKLLVYEYVANESLDKLLFKSDKRGQLDWKTRYNIIIGIARGLLYLHQDSHSCIIHRDIKASNILLDDKWVPKIADFGMAR LFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVGADVFSFGVLVLELISGQRNSTFSQQHVEAQNLLDWAYKHHKKDRSLEIMDPELASSAVTEEVKTCIH IGLLCTQGDPQSRPHMRRIVVLLSRKPSNLEEPGRPGVPGSRYRRSRRPGGMSSTAGTFGTAGTFGESDSRTFNSSSNTKTATASTSASRETPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70740			Protein kinase superfamily pro...		Potri.008G132300 [exp]	0	1
AT1G67530			ARM repeat superfamily protein...		Potri.007G023700 [exp]	1.00	0.9069
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Potri.001G053500 [exp]	9.48	0.8236
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088222 [exp]	12.56	0.9002
AT5G17680			disease resistance protein (TI...		Potri.019G113701 [exp]	13.11	0.8854
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	17.32	0.8824
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.001G254800 [exp]	17.32	0.8665
					Potri.007G076600 [exp]	18.97	0.8808
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G027400 [exp]	22.27	0.8770
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.005G224100 [exp]	22.44	0.8780
AT3G14470			NB-ARC domain-containing disea...		Potri.003G015500 [exp]	22.58	0.8256

Compare expression of checked genes

Potri.008G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.