Plant FIBer expression Database

Potri.008G132500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23190 987 / 0 PGM3 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
AT1G70730 980 / 0 PGM2 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
AT5G51820 647 / 0 STF1, PGM1, ATPGMP, PGM STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G109500
[exp]
1088 / 0 AT1G70730 1006 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
Potri.012G132500
[exp]
649 / 0 AT5G51820 1029 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
Potri.015G134700
[exp]
644 / 0 AT5G51820 1033 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001596
[exp]
1015 / 0 AT1G23190 1024 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
Lus10021777
[exp]
1014 / 0 AT1G70730 1026 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
Lus10003712
[exp]
1011 / 0 AT1G23190 1017 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
Lus10034595
[exp]
1001 / 0 AT1G70730 1017 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
Lus10031669
[exp]
643 / 0 AT5G51820 1003 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
Lus10027400
[exp]
626 / 0 AT5G51820 966 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence
>Potri.008G132500.3 pacid=42808371 polypeptide=Potri.008G132500.3.p locus=Potri.008G132500 ID=Potri.008G132500.3.v4.1 annot-version=v4.1
ATGGTGCTATTCAATGTTTCACGAGTGGAGACCACTCCTTTCGGAGACCAGAAACCTGGAACTTCTGGCCTTCGCAAGAAGGTGAAGGTGTTCAAGCAAC
CTAATTATCTGCAGAATTTTGTCCAATCAACCTTCAATGCCCTCACTCCACAAAATGTTAGAGGTGCTACACTTGTTGTTTCTGGTGATGGTCGCTATTT
CTCAAAGGATGCCATTCAGATTATTACTAAGATGGCAGCTGGAAATGGATTAAGACGTGTTTGGGTTGGTCAGAATGGACTGCTTTCAACTCCTGCAGTA
TCTGCTGTAATACGTGAAAGAGTTGGTGTAGATGGATCCAAGGCAACGGGAGCATTTATATTGACAGCAAGTCACAACCCAGGTGGTCCTAATGAGGATT
TTGGGATCAAATATAACATGGAAAATGGTGGACCTGCTCCTGAGGGAATCACAGATAAGATTTATGAGAACACTAAAACAATAAAGGAGTACTTAACTGC
TGATCTGCCTGATGTGGATATTACAGCAATTGGTGTAACCAGCTATTGTGGGTCTGAGGGACAGTTTGATGTTGAGGTGTTTGACTCGGCTAGCGATTAT
GTCAAATTGATGAAGTCTATTTTTGACTTTGAGTCCATCCGGAAGCTGCTTTCCTCTCCAAAATTCACTTTCTGCTATGATGCACTACATGGAGTTGGTG
GGGCATATGCAAAACGCATTTTTGTGGAGGAGCTTGGAGCACAAGAGAGCTCCTTATTGAACTGTGTACCCAAGGAGGACTTTGGAGGAGGGCATCCAGA
TCCCAATCTCACTTATGCGAAGGAGTTGGTTGCTCGTATGGGATTGGGTAAATCTAACTCTGAAGTTGAACCACCAGAATTTGGTGCTGCTTCTGATGGT
GATGCTGATCGGAATATGATCCTTGGTAAAAGGTTCTTTGTTACTCCATCAGATTCTGTTGCCATCATCGCTGCAAATGCAGTGGAGGCCATACCATATT
TCTCTGCTGGTCTAAAAGGAGTTGCCAGGAGCATGCCAACATCAGCTGCCCTTGACGTTGTGGCAAAAAATCTGAACTTGAAATTTTTTGAGGTTCCAAC
TGGATGGAAGTTTTTTGGTAATTTGATGGATGCTGGTTTATGTTCAGTTTGCGGGGAAGAAAGTTTTGGAACTGGCTCAGACCACATACGTGAGAAGGAT
GGAATTTGGGCAGTTCTGGCTTGGCTATCCATTCTGGCTTGCAAGAATAGAGAAAATCTTGGTGGTGGAAAGCTTGTGACAGTTGAAGATATAGTTCACA
ACCATTGGGCTACCTATGGTCGCCACTACTATACTCGATATGACTATGAGAATGTTGATGCAGGTGCAGCAAAGGAATTAATGGCATGCTTGGTCAAACT
GCAATCTTCCCTTACTGAAGTTAACGAGATTGTCAGTGGTATACAATCAGATGTGTCAAAGGTTGTTCATGCTGATGAGTTTGAATACAAAGATCCTGTT
GATGGTTCCATTTCAAAGCACCAGGGTATTCGATATCTGTTTGAGGATGGCTCAAGACTGGTTTTCCGCCTCTCAGGAACTGGTTCAGAAGGTGCTACCA
TCAGACTCTACATTGAGCAATATGAGAAGGATCCATCAAAAACTGGAAGAGATTCTCAAGATGCACTTGCTCCTCTTGTGGCAGTTGCTCTGGGGCTTTC
TAAGATGCAGGAATTCACTGGCCGATCTGCACCAACCGTCATAACATAG
AA sequence
>Potri.008G132500.3 pacid=42808371 polypeptide=Potri.008G132500.3.p locus=Potri.008G132500 ID=Potri.008G132500.3.v4.1 annot-version=v4.1
MVLFNVSRVETTPFGDQKPGTSGLRKKVKVFKQPNYLQNFVQSTFNALTPQNVRGATLVVSGDGRYFSKDAIQIITKMAAGNGLRRVWVGQNGLLSTPAV
SAVIRERVGVDGSKATGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYLTADLPDVDITAIGVTSYCGSEGQFDVEVFDSASDY
VKLMKSIFDFESIRKLLSSPKFTFCYDALHGVGGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSNSEVEPPEFGAASDG
DADRNMILGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKD
GIWAVLAWLSILACKNRENLGGGKLVTVEDIVHNHWATYGRHYYTRYDYENVDAGAAKELMACLVKLQSSLTEVNEIVSGIQSDVSKVVHADEFEYKDPV
DGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQDALAPLVAVALGLSKMQEFTGRSAPTVIT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G23190 PGM3 phosphoglucomutase 3, Phosphog... Potri.008G132500
[exp]
0 1
AT5G17310 AtUGP2, UGP2 UDP-glucose pyrophosphorylase ... Potri.004G074400
[exp]
3.74 0.9179
AT5G37310 Endomembrane protein 70 protei... Potri.004G075525
[exp]
5.65 0.9324
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.006G063000
[exp]
14.69 0.9043 AVP.5
AT4G29130 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDO... Potri.001G190400
[exp]
15.36 0.9218
AT5G50175 unknown protein Potri.015G083900
[exp]
16.73 0.9043
AT5G37310 Endomembrane protein 70 protei... Potri.004G075450
[exp]
17.57 0.9230
AT5G11960 Protein of unknown function (D... Potri.018G060500
[exp]
19.49 0.9213
AT1G64980 Nucleotide-diphospho-sugar tra... Potri.011G117500
[exp]
20.49 0.8911
AT1G62640 KAS III, KASIII 3-ketoacyl-acyl carrier protei... Potri.001G120900
[exp]
22.09 0.8904 Pt-KAS.2
AT4G19185 nodulin MtN21 /EamA-like trans... Potri.004G237100
[exp]
24.00 0.8867 N21L2

Potri.008G132500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.