Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01630 722 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 681 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 576 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 463 / 6e-160 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 333 / 2e-109 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 333 / 1e-108 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 332 / 1e-108 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 328 / 8e-108 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 327 / 4e-107 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 298 / 5e-96 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108500 [exp] 914 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G086400 [exp] 750 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 745 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G006100 [exp] 571 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 568 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 486 / 6e-169 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 474 / 2e-164 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 345 / 9e-114 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 331 / 1e-108 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013465 [exp] 805 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 779 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 739 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 723 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 722 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031456 [exp] 542 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 484 / 1e-167 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 447 / 6e-154 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 343 / 3e-113 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012937 [exp] 332 / 2e-109 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.008G133200.1 pacid=42807036 polypeptide=Potri.008G133200.1.p locus=Potri.008G133200 ID=Potri.008G133200.1.v4.1 annot-version=v4.1 ATGGCTGTGCTGTTCCTGCTTTTCTTGCTGACAGTGTCTGTTGTTTCTGCTGATGAAGATGGCTTCATTGGTGTAAACATTGGCACAGCAATTTCTGACA TGCCAAGCCCAACTCAGGTGGTAGCCCTTCTTAAGGCTCAGAATATTAGACATGTCAGGCTCTATGATGCAGACCGAGCCCTGCTTCTTGCCCTTGCCAA CACAGGCATCCGTGTAACTGTTTCTGTTCCTAATGACCAGATCCTTGGCATTGGTCAATCGAATGCCACGGCAGCCAACTGGGTTGCTCGAAATGTAATA GCCCATGTCCCTGCCACCAACATCACAGCCATTGCAGTTGGATCTGAAATCCTTACTACGCTCCCAAATGCTGCCCCTGTCCTGGTCTCTGCCCTGAAGT TCATCCATTCTGCCCTTGTTGCCTCCAATCTTGATGGCCAAATTAAAGTCTCTACCCCTCACTCTTCTTCCATCATCCTTGACTCGTTCCCTCCTTCTCA AGCCTTTTTTAATCGCTCTTGGGATCCAGTCATGGTTCCCTTGCTTAAATTTTTGCAGTCCACAGGGTCGTACTTCATGCTAAATGCATATCCATATTAC GACTACATGCAATCAAATGGTGTGATCCCATTGGATTATGCGCTTTTCCGTCCCCTCCCTCCTGACAAGGAAGCCGTGGATGCTAATACACTCCTTCATT ACACTAATGTCTTTGATGCCATTGTTGATGCAGCATATTTTGCTATGTCCTATCTGAATTTCACCAATGTCCCTATTTTTGTGACGGAGTCTGGTTGGCC CTCCAAAGGTGACTCATCTGAGCCAGATGCAACACTTGAAAATGCTAACACTTACAACAGCAACTTGATCAGGCATGTGCTTAATAACACAGGCACTCCC AAACATCCTAAAATTGCAGTTAGTACATATATTTATGAACTCTATAATGAAGATTTGAGACCCGGGGCAATATCTGAAAAGAACTGGGGGCTTTTTGATG CCAACGGCATGCCAGTTTATACCTTACACTTGACTGGTGCTGGTACTGTATTGGCAAACGACACCACAAACCAAACCTTCTGCGTGGCAAAGGAAGGTGC TGACCCGAAGATGCTACAAGCTGCTCTTGATTGGGCTTGTGGACCAGGAAAAGTTGATTGCTCATACTTGTTACAAGGGCAGCCATGTTACGAGCCAGAT AATGTTGTTGCTCATTCAACATATGCTTTCAATGCTTATTTCCAGAAGATGGCCAAGTCTCCCGGTACTTGTGATTTTAAAGGTGTGGCTACCATCACCA CCACTGACCCAAGTCATGGTTCCTGTATATTTCCTGGAAGTGCTGGAAGAAATGGCAGCTTGCCAAATACAACTTCTCTGGCACCATCTTCAAATTCTAC GACGTCTGGTTGCCATTCAGTATATATCTATGGTGCTGGCTCTTTCACAACCTCTGTGATTATAGGTGTTTTACTAATGAGCGTGTTTTTCTTGTAA
AA sequence Show only first row Show all	>Potri.008G133200.1 pacid=42807036 polypeptide=Potri.008G133200.1.p locus=Potri.008G133200 ID=Potri.008G133200.1.v4.1 annot-version=v4.1 MAVLFLLFLLTVSVVSADEDGFIGVNIGTAISDMPSPTQVVALLKAQNIRHVRLYDADRALLLALANTGIRVTVSVPNDQILGIGQSNATAANWVARNVI AHVPATNITAIAVGSEILTTLPNAAPVLVSALKFIHSALVASNLDGQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYFMLNAYPYY DYMQSNGVIPLDYALFRPLPPDKEAVDANTLLHYTNVFDAIVDAAYFAMSYLNFTNVPIFVTESGWPSKGDSSEPDATLENANTYNSNLIRHVLNNTGTP KHPKIAVSTYIYELYNEDLRPGAISEKNWGLFDANGMPVYTLHLTGAGTVLANDTTNQTFCVAKEGADPKMLQAALDWACGPGKVDCSYLLQGQPCYEPD NVVAHSTYAFNAYFQKMAKSPGTCDFKGVATITTTDPSHGSCIFPGSAGRNGSLPNTTSLAPSSNSTTSGCHSVYIYGAGSFTTSVIIGVLLMSVFFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.008G133200 [exp]	0	1
AT2G01620		MEE11	maternal effect embryo arrest ...		Potri.008G133100 [exp]	1.00	0.8448
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.017G094500 [exp]	3.00	0.8217
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.009G074200 [exp]	3.16	0.8117
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.009G101200 [exp]	3.46	0.8180
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	12.64	0.7899
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Potri.006G164632 [exp]	13.67	0.7649
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Potri.008G086000 [exp]	16.49	0.7537
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	16.97	0.7843	Pt-EIN3.1
AT3G12670		EMB2742	embryo defective 2742, CTP syn...		Potri.010G176500 [exp]	17.97	0.7382
AT1G33055			unknown protein		Potri.001G452500 [exp]	18.13	0.6983

Compare expression of checked genes

Potri.008G133200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.