Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23230 2286 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108350 [exp] 0 / 1 AT1G23230 0 / 1 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035997 [exp] 2045 / 0 AT1G23230 1850 / 0.0 unknown protein Lus10016701 [exp] 1248 / 0 AT1G23230 1096 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11573 [poplar] [flax] Med23 Mediator complex subunit 23
Representative CDS sequence Show only first row Show all	>Potri.008G133300.4 pacid=42805982 polypeptide=Potri.008G133300.4.p locus=Potri.008G133300 ID=Potri.008G133300.4.v4.1 annot-version=v4.1 ATGGAACAAAGCCAGAGATCAATAACAGCAGCAGCAGCCTCGGCCTCAGCCTCCTCACGCGGTCACCAATTCCACCCAGCTCGAGCTGCCATTATCGATC TCTTCAACCTCTACTTAGGCCGAAGCAGCCGCCAAAAACCCGATGATTCAGCTCGTGAACTGCCGAACAAGACACAAAAGCGTGTTCTTGCTCTCAACAG AGAGCTTCCTCCTCCGAATGAGCAATTTCTCTTAGATTTCGAGCAACTTCATACCCAATTTCCGGATCAAGAGCAATTGCGTGCTGTTACAGAATCTGTA CTTATAACTCTGGTTGTGCAATGTAGTAATCACGCCCCGCGGGCGGATTTTCTTCTATTTGCCCTACGGAGTTTATGTAGTATAGAGTACATTAACTGGG ATAGTTTCTTGCCTAGTCTTCTTTCTTCAGTATCTACCACCGAATTGTCAGTCAGCCAGGCAGGTCAAGCAGTGCCAGCTGTTTCGTCCACTGGTTTAGC GCAGAATGGGATGCTTCCTTCTTCAAGCACAATCTCCAATTCGTCAATTTTTCAGTCTTTGAATCCTACATCCCCACTATCTTCTGTTCATGGCATTGGC TCTCCAGCCCCATTGGGGATGGAAGCTTCACCTTCTGTAGCTATGTCTCCGGTTAAATCATCAGATATTTCTGGTAATGGGCCACAATCTTCAGCAAGGG TCAATTTATTGATAAGGGACAGTGCCATGAGCAGTCTTCGCCAGCTATGTTGCAAGATTATTTTAACTGGACTTGAGTTTAATTTGAAGCCAGTGACTCA TGCTGATATTTTCAACCATATGTTGAGCTGGCTGGTTAATTGGGATCAAAGACAACATGGTGTCGATGAATCTGATGGTGTGAAATCCTGGAGACCTGTC AAGGCTCTGATTGAATGGCTGCATAGTTGTTTGGATGTGATCTGGCTGCTGGTGGATGAGGATAAATGCCGAGTGCCCTTCTATGAATTATTGCGCAGCG GGTTGCAGTTTATAGAGAACATTCCTGATGACGAGGCCTTATTTACACTTATCTTGGAGATTCATAGGAGGCGAGATATGATGGCTATGCACATGCAAAT GTTGGATCAACACCTTCACTGCCCCACATTTGGTACCCATCGGGTTTTGTCTCCTACAATTCCTACTGTTTCAGTTGAAGCTGTGGCTAACTTGCGCTAT TCACCAATCACATACCCAAGCGTGCTTGGAGAACCTTTGCATGGAGAGGATCTTGCAAATTCTATTCAGAGGGGAAGTTTGGACTGGGAAAGAGCTTTGC GTTGTATAAGACATGCTCTTCGTACTACTCCATCACCTGACTGGTGGAAGCGTGTGCTTCTTGTGGCTTCTTGCTATAGGCCTGCTCATGGGCCTACTCC TGGTGCTGTTTTCACTTCTAGTATGATTTGTGAGGCCACTATTGATAGAATTGTTGAACTGTTGAAGTTGACAAATTCAGAAATGAATTGTTGGCAGGAG TGGCTTGTATTCTCTGATATCTTCTACTTTCTTGTGAAAAGTGGGTGCATAGATTTTATCGATTTTGTGGACAAACTGGTTTCAAGGCTAATAGAGGGTG ATCAGCACATTGTTCGAACAAATCATGTTACTTGGCTGTTTGCACAAATTATTCGGATTGAGCTTGTGATGAATGCATTAAATACAGATGCTAGAAAGGT AGAGACAACCCGAAAGGTTTTATCATTTCACAGGGAAGATCGAAGCTCTGATCCTAATAATCCTCAAAGCATCCTGCTTGATTATATTAGCAGTTGCCAA AACTTACGTATTTGGTCATTGAACACATCAACAAGGGAATGTTTAAATAGTGAACAGCTTCAGAAAGGAAAGCAAATAGATGAGTGGTGGAGGCAAGCAA GCAAAGGGGATCGGATGTTGGATTACATGAATATGGATGATAAATCAATTGGAATGTTTTGGGTTGTATCCTACACCATGGCTCAGCCAGCTTCTGAAAC AGTGGTGAACTGGTTATCCTCAGCTGGAGTTTCTGAATTATTAACTGGAACAAACATGCAGTCTAATGAGCGGTTAATGGTGATGAGGGAAGTAAGCCCT TTGCCGATGTCACTATTATCTGGACTTTCCATGAACCTATGTTTGAAGTTGGTGTTTCAAATGGAAGATTCTTTATTTGCTGGGCAGGTTGTTCCTAGCA TTGCAATGGTTGAAACATATTGTCGATTGCTGCTCATCGCTCCTCATTCACTGTTTCGGTCACACTTCAGTCATTTGGCACAGAGGTATCAATCAATATT GAGCAAGCCTGGGGTGACTCTTTTGGTGCTAGAAATTGTGAACTATCGCTTGCTTCCACTTTACAGGTATCAAGGGAAAAGCAAAACCTTAATGTATGAT GTTACGAAAATAGTTTCTACTTTAAAGGGGAAACGAGGAGATCACCGTGTTTTTAGGTTGGCTGAAAACTTGTGCATGAACCTCATTTTATCACAAAGGG ATTTTTTCTCAGTGAAGAGAGAAGGGAAGGGCCCCACTGAATTTACTGAAACTTTGAATCGTGTAACTATAGTCACTCTTGCCATCATCATAAAAACACG TGGAATTGCTGACGCTGATCACATGCTTTATCTTCAAACTATGTTAGAACAGATATTGGCAACAAGTCAACATACATGGTCAAAAAAAACATTAAGCTAC TTCCCTCCTCTTCTTCGTGATGCCTTGATTGGGAGGATAGATAAAAGGGGTTTGGCTATTAAAGCTTGGCAACAGGCAGAAACAACAGTGATTAACCAAT GTACCCAGCTGATCTCACTATCAGCTGATCCCACTTATGTGATGACATATATCAATCATAGTTTCCCCCAACACCGACAATATCTATGTGCTGGTGCATG GATACTGATGCAGGGACACCCTGAAAACATCAATAGCGGACATCTGGCACGTGTTTTGAGAGAATTTTCCCCTGAAGAAGTGACAGCGAATATATACACA ATGGTGGATGTTCTACTTCATAACATTCATGTGGACCTTCAGCATGGGCATACCTTACAGGACCTTTTATTGAAAACTTGTGCAAACCTTGCCTTTTTCA TTTGGACTCATGAGTTGCTGCCGTTGGATATTTTGCTTCTGGCACTTACTGACCGTGATGATGATCCCCATGCTTTGCGTATTGTGATTAGCTTGCTTGA TAGGCAGGAACTTCAATCAAGAGTGAAACTATTTTGTATGAATCGTGTGCGTCCTGAGCATTGGATTCTCTCAGGACAGTTCAAGCGTCTTGAATTGGCA AAGGCACTTGGAAATCATCTATCATGGAAGGACAGGTATCCCACATTTTTTGATGACATTGCGGCACGCTTGCTTCCAGTCATCCCATTAATTGTTTATA GACTTCTTGAGAATGATGCTGTAGATCCAGCAGACAGAGTTCTGGCCATGTATTCTCCACTTTTAGAATATCACCCCTTAAGATTCACATTTGTTCGTGA TATACTTGCCTACTTCTATGGTCATCTTCCTGGAAAGCTTGTTGTGCGGATACTGAATGTACTTGATCTTAGTAAGATCCCATTTTCCGAGTCATTCCCA CAGCACATTAGCTCACCAAACCCTGTCATCTGCCCGCCCCCAGAGTATTTTGCAACTCTTTTGTTAGGGCTTGTGAATAATGTGATACCCCCACTAAATA CCAACTCAAAGTATGGATCAGTTGGAGACGCTTCAAATAATTCAGGGCGCAATCCACATACCAAGACATCAGCAGCCTCTCAGTCTGGGCCAACGAATGC TTCTGAGGGTCAAAAGGCGTTCTATCAAATCCAGGATCCTGGAACTCATACTCAACTGGTTCTAGAAACAGCTGTCATAGAATTGCTCTCACTTCCAGTA GCTGCATCCCAAATTATCCCCTCTCTAGTTCAGATTGTTGTTAATATACAACCGACTCTAATTCAATCCAGCAATGGAGCTCCAAATTGTGTTGGACAAG GATCAGTTTTGCCAACGTCGCCTTCTGGGGGAAGTACTGATTCACTGGGTGGAAGCAGATCAACCCCTTCAGTTTCAGGAATCAATACTTCAAATTTTGT TTTACGAAGTGGTTATACTTGCCAACAACTTTCTTGCTTGTTGATCCAAGCTTGTGGTCTCTTACTAGCTCAGCTCCCTCCTGATTTTCATGTGCAACTT TATATGGAGGCATCGCGCATAATAAAAGAGTGTTGGTGGCTTACTGATAGCAAAAGGTCACTTGGGGAACTAGACTCTGCTGTTGGCTATGCATTGTTGG ATCCAACATGGGCTGCTCAAGACAACACCTCAACAGCAATCGGTAACATAATTGCCCTGCTGCATTCTTTCTTTAGCAACCTCCCACAGGAATGGCTAGA AGGAACACATGCTATCATTAAACATCTCAGGCCAATAACATCAGTTGCAATGTTGAGGATAGCATTCCGTATAATGGGTCCATTGCTCCCAAGACTTGCT AACTCTCACACGCTCTTCAATAAGACCCTCTCATTGCTTTTAAATACAATGGTCGATGTTTTTGGGAGGAATTCACAGACATCAACTGCTGTTGAAGCAT CAGAAATTGCAGATCTTGTTGACTTTCTCCATCATGTTGTCCATTATGAAGGGCAGGGAGGTCCTGTCCAGGCTAACAGCAAGCCTAAAGCAGAGGTTCT TGCCCTTTGTGGGAGGGCAGCAGAAAGTCTACGTCCAGATTTGCAACATCTTCTTTCGCACTTGAAACCTGATATGAATTCTTCTATATATGCTGCCACT CATCCAAAGTTGGTCCAGAATCCCCCATGA
AA sequence Show only first row Show all	>Potri.008G133300.4 pacid=42805982 polypeptide=Potri.008G133300.4.p locus=Potri.008G133300 ID=Potri.008G133300.4.v4.1 annot-version=v4.1 MEQSQRSITAAAASASASSRGHQFHPARAAIIDLFNLYLGRSSRQKPDDSARELPNKTQKRVLALNRELPPPNEQFLLDFEQLHTQFPDQEQLRAVTESV LITLVVQCSNHAPRADFLLFALRSLCSIEYINWDSFLPSLLSSVSTTELSVSQAGQAVPAVSSTGLAQNGMLPSSSTISNSSIFQSLNPTSPLSSVHGIG SPAPLGMEASPSVAMSPVKSSDISGNGPQSSARVNLLIRDSAMSSLRQLCCKIILTGLEFNLKPVTHADIFNHMLSWLVNWDQRQHGVDESDGVKSWRPV KALIEWLHSCLDVIWLLVDEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRVLSPTIPTVSVEAVANLRY SPITYPSVLGEPLHGEDLANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVASCYRPAHGPTPGAVFTSSMICEATIDRIVELLKLTNSEMNCWQE WLVFSDIFYFLVKSGCIDFIDFVDKLVSRLIEGDQHIVRTNHVTWLFAQIIRIELVMNALNTDARKVETTRKVLSFHREDRSSDPNNPQSILLDYISSCQ NLRIWSLNTSTRECLNSEQLQKGKQIDEWWRQASKGDRMLDYMNMDDKSIGMFWVVSYTMAQPASETVVNWLSSAGVSELLTGTNMQSNERLMVMREVSP LPMSLLSGLSMNLCLKLVFQMEDSLFAGQVVPSIAMVETYCRLLLIAPHSLFRSHFSHLAQRYQSILSKPGVTLLVLEIVNYRLLPLYRYQGKSKTLMYD VTKIVSTLKGKRGDHRVFRLAENLCMNLILSQRDFFSVKREGKGPTEFTETLNRVTIVTLAIIIKTRGIADADHMLYLQTMLEQILATSQHTWSKKTLSY FPPLLRDALIGRIDKRGLAIKAWQQAETTVINQCTQLISLSADPTYVMTYINHSFPQHRQYLCAGAWILMQGHPENINSGHLARVLREFSPEEVTANIYT MVDVLLHNIHVDLQHGHTLQDLLLKTCANLAFFIWTHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQSRVKLFCMNRVRPEHWILSGQFKRLELA KALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLLENDAVDPADRVLAMYSPLLEYHPLRFTFVRDILAYFYGHLPGKLVVRILNVLDLSKIPFSESFP QHISSPNPVICPPPEYFATLLLGLVNNVIPPLNTNSKYGSVGDASNNSGRNPHTKTSAASQSGPTNASEGQKAFYQIQDPGTHTQLVLETAVIELLSLPV AASQIIPSLVQIVVNIQPTLIQSSNGAPNCVGQGSVLPTSPSGGSTDSLGGSRSTPSVSGINTSNFVLRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQL YMEASRIIKECWWLTDSKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIIALLHSFFSNLPQEWLEGTHAIIKHLRPITSVAMLRIAFRIMGPLLPRLA NSHTLFNKTLSLLLNTMVDVFGRNSQTSTAVEASEIADLVDFLHHVVHYEGQGGPVQANSKPKAEVLALCGRAAESLRPDLQHLLSHLKPDMNSSIYAAT HPKLVQNPP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23230			unknown protein		Potri.008G133300 [exp]	0	1
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.006G033800 [exp]	3.31	0.8177	Pt-UBP5.3
AT4G10070			KH domain-containing protein (...		Potri.013G099800 [exp]	9.74	0.8424
AT1G72390			unknown protein		Potri.001G165800 [exp]	10.95	0.8547
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	11.74	0.8532
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	12.64	0.8345
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.016G043500 [exp]	14.49	0.8400	CHR929
AT1G15780			unknown protein		Potri.003G012400 [exp]	16.24	0.8435
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.005G237500 [exp]	17.29	0.8166	Pt-XRN2.2
AT5G22450			unknown protein		Potri.010G238400 [exp]	26.32	0.8390
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	27.03	0.7716

Compare expression of checked genes

Potri.008G133300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.