Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17860 168 / 3e-49 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 121 / 7e-32 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT1G70700 119 / 2e-31 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G19180 54 / 1e-08 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT5G20900 49 / 1e-06 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT4G14713 48 / 3e-06 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT4G14720 48 / 6e-06 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT1G74950 44 / 0.0001 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G32570 42 / 0.0005 ZIM TIFY8 TIFY domain protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108200 [exp] 417 / 7e-147 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.015G035800 [exp] 229 / 3e-72 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.012G044900 [exp] 226 / 5e-71 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.006G139400 [exp] 67 / 1e-12 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.005G214300 [exp] 52 / 2e-07 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.003G068900 [exp] 51 / 3e-07 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.002G048500 [exp] 50 / 9e-07 AT4G14720 95 / 6e-22 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.018G033700 [exp] 48 / 5e-06 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1) Potri.001G166200 [exp] 46 / 1e-05 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017991 [exp] 143 / 3e-39 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10041986 [exp] 121 / 2e-31 AT3G17860 174 / 4e-51 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031333 [exp] 102 / 4e-24 AT3G17860 155 / 8e-44 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031907 [exp] 81 / 1e-16 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10039911 [exp] 55 / 2e-08 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10036584 [exp] 55 / 3e-08 AT1G74950 64 / 9e-12 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10027648 [exp] 51 / 4e-07 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10035804 [exp] 50 / 1e-06 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1) Lus10014700 [exp] 49 / 3e-06 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10013138 [exp] 48 / 6e-06 AT4G32570 152 / 2e-42 TIFY domain protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF09425 [poplar] [flax] Jas_motif Jas motif
Representative CDS sequence Show only first row Show all	>Potri.008G133400.8 pacid=42806731 polypeptide=Potri.008G133400.8.p locus=Potri.008G133400 ID=Potri.008G133400.8.v4.1 annot-version=v4.1 ATGGAAAGAGATTTTTTGGGTTTGAGTTCAAGAGAACCACTGGCTGTGGTTAAGGAGGAGGTAAACGCTGATGGGTGTAAAGAGTCAGGTTCAGGGATGC AGTGGCCCTTCTCTAACAAGGTCTCCACCCCTCGTCACTCCACGGCTGAAATCCAGAAATTATTCAATCTCAATAGACAAGGTGGGACTCATTTTTCACT GACTGCTTATCCTGTGCAACACGATGTGCATTCTATGCATCATCCTCATGATGTGAAGATGTTTCCAGTCTCCAATCATGCAATTCCAATTTCTATGGGC AACCATTTCTTCAAGAATCATTATCCAGCAACTGGTCAGAATATGGCGGGGACTACCACGAAGCCACAGTTGCTAGGAGGAATTCCTGTCACAGCTCCAC ATTCAATTCTTCCAATGGTTGGTTCTGTTGCTGGGGTAACAGACTCAAGTGTCAGGGCATCTGGGTCTCCTGCTCAATTGACCATCTTTTATGCTGGCTC AGTCAATGTCTATGATGATATATCCCCTGAGAAGGCTCAGGCAATCATGTTCTTGGCTGGAAATGGGCCTTCCATTTCATCTAACTTAGCACAGCCAATA GTCCAAGTCCAGGCATCTAGCTCTAAGCCAGCAGCAGCTGATCTTAGTCCTGTGAACCAACCTATAATGTCCACTCCACCATGCTCTCGTCTCTCAAGCC CATCACATACTGGTGCCCAATCAGGGAGTGGGTCAACTAGTACTGAGGAAATCATGGCAACTAAAACCACAGGAGCTTTGACCACTCATGTTACCAAACC AGAGCATACAAAGACAGCAAATGTAGTGGGATCTGTTACTACAACCACCATGATACCATCTGTCCCTCAGGCTCGAAAAGCATCATTGGCTCGGTTTTTA GAGAAGCGCAAGGAAAGGGTGATGAATGCGGCACCATACAACCTCAATAAGAAATCTCCACATTTTACCAACCCTGAACCCTATTAA
AA sequence Show only first row Show all	>Potri.008G133400.8 pacid=42806731 polypeptide=Potri.008G133400.8.p locus=Potri.008G133400 ID=Potri.008G133400.8.v4.1 annot-version=v4.1 MERDFLGLSSREPLAVVKEEVNADGCKESGSGMQWPFSNKVSTPRHSTAEIQKLFNLNRQGGTHFSLTAYPVQHDVHSMHHPHDVKMFPVSNHAIPISMG NHFFKNHYPATGQNMAGTTTKPQLLGGIPVTAPHSILPMVGSVAGVTDSSVRASGSPAQLTIFYAGSVNVYDDISPEKAQAIMFLAGNGPSISSNLAQPI VQVQASSSKPAAADLSPVNQPIMSTPPCSRLSSPSHTGAQSGSGSTSTEEIMATKTTGALTTHVTKPEHTKTANVVGSVTTTTMIPSVPQARKASLARFL EKRKERVMNAAPYNLNKKSPHFTNPEPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.008G133400 [exp]	0	1
AT3G43740			Leucine-rich repeat (LRR) fami...		Potri.009G090700 [exp]	6.78	0.7590
					Potri.016G089400 [exp]	7.21	0.7631
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Potri.008G151100 [exp]	7.34	0.7344
					Potri.013G062401 [exp]	8.00	0.7355
AT2G16365			F-box family protein (.1.2.3.4...		Potri.009G118651 [exp]	9.74	0.7379
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.009G149900 [exp]	14.59	0.7401
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034400 [exp]	16.37	0.7382
AT3G03980			NAD(P)-binding Rossmann-fold s...		Potri.019G033500 [exp]	17.02	0.7343
					Potri.001G092600 [exp]	17.32	0.7276
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.009G012400 [exp]	19.97	0.7091	BGAL8.1

Compare expression of checked genes

Potri.008G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.