Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01660 332 / 2e-114 PDLP6 plasmodesmata-located protein 6 (.1.2) AT5G37660 286 / 2e-96 PDLP7 plasmodesmata-located protein 7 (.1.2) AT1G70690 232 / 3e-75 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 192 / 8e-60 PDLP8 plasmodesmata-located protein 8 (.1) AT2G33330 101 / 8e-25 PDLP3 plasmodesmata-located protein 3 (.1) AT1G04520 97 / 3e-23 PDLP2 plasmodesmata-located protein 2 (.1) AT5G43980 89 / 3e-20 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) AT1G63570 86 / 2e-19 Receptor-like protein kinase-related family protein (.1) AT1G63550 85 / 1e-18 Receptor-like protein kinase-related family protein (.1) AT5G48540 84 / 1e-18 receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108100 [exp] 447 / 7e-160 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.017G130800 [exp] 327 / 1e-112 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.004G086000 [exp] 324 / 1e-111 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.014G067000 [exp] 189 / 2e-58 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.002G145400 [exp] 169 / 8e-51 AT3G60720 243 / 8e-80 plasmodesmata-located protein 8 (.1) Potri.002G257300 [exp] 143 / 2e-40 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 107 / 4e-27 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.008G171700 [exp] 104 / 7e-26 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.002G249600 [exp] 89 / 1e-20 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016710 [exp] 310 / 2e-105 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10020814 [exp] 288 / 6e-97 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10036006 [exp] 208 / 1e-64 AT2G01660 233 / 1e-74 plasmodesmata-located protein 6 (.1.2) Lus10010362 [exp] 163 / 1e-47 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10036497 [exp] 134 / 7e-37 AT3G60720 210 / 9e-67 plasmodesmata-located protein 8 (.1) Lus10001052 [exp] 110 / 6e-28 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10014475 [exp] 103 / 1e-25 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10023726 [exp] 102 / 4e-25 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10018380 [exp] 97 / 1e-22 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007632 [exp] 92 / 2e-20 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.008G133500.1 pacid=42806363 polypeptide=Potri.008G133500.1.p locus=Potri.008G133500 ID=Potri.008G133500.1.v4.1 annot-version=v4.1 ATGTCTAGGACAATAACGATGGCACCTCTTATCTCCCTTCTAACAATCGCACTTCTTACTACCCCAGCAATTTCCTCCGTAGACACTTTTGTCTACGGTG GCTGTTCACAAGTAAAATACACACCGGGTTCTCCTTACGAGTCCAACGTCAACTCGCTACTTACCTCCCTTGTTAACTCGGCCACGTTCACCATCTACAA CAACTTCACCATCAAGTCCCCGACATCACAGGACACCCTTTACGGTCTCTTCCAGTGCCGGGGAGACCTCTCCAATGGTGACTGTGCCAGCTGTGTAGCT CGTGCAGTGAGTCAACTCGGCACTCTTTGCCTTGACTCGACCGGTGGCGCCTTGCAGCTTGATGGGTGTTTCGTAAAATACGATAACACGACGTTTCTTG GTGTGGAAGACAAGACGGAGGTGTTGAAGAAATGTGGGCCGTTGATTGCGTATGATTCTGATGAGCTGAACAGGCGTGATGCGGTGATGGATTACCTGGG GACTAGTGATGGGTCCTCCAAGCCTTTCAGAATTGGTGGGTCCGGGGATATTTCTGCTGTGGCGCAGTGCGTCCAAGATTTGAGTGCGAGCGAGTGTCAG GATTGTTTGTCTGAGGTGGTCGGACGGCTGAAAACTTACTGTGGGGCGGCTGCCTCGGGGGACATGTACTTGGCCAAGTGTTATGTTCGGTTCTCCAAAG CTGGGGCCCACTCCCACGGCGGAAATGTAGATCACGACGAAAATGATGAGGTCGAGAAGACACTTGCAATTTTAGTAGGACTTATTGCTGGGGTTGCATT GCTCATTGTATTCCTTGCTTTCTTAAGAAAAGCTTGTGGAAAAGGAAAATGTAAGCTACTTGTTTATCTTTCTTTGCATCTTTATAGTTCTCTTTACTGT GTTCCTTGA
AA sequence Show only first row Show all	>Potri.008G133500.1 pacid=42806363 polypeptide=Potri.008G133500.1.p locus=Potri.008G133500 ID=Potri.008G133500.1.v4.1 annot-version=v4.1 MSRTITMAPLISLLTIALLTTPAISSVDTFVYGGCSQVKYTPGSPYESNVNSLLTSLVNSATFTIYNNFTIKSPTSQDTLYGLFQCRGDLSNGDCASCVA RAVSQLGTLCLDSTGGALQLDGCFVKYDNTTFLGVEDKTEVLKKCGPLIAYDSDELNRRDAVMDYLGTSDGSSKPFRIGGSGDISAVAQCVQDLSASECQ DCLSEVVGRLKTYCGAAASGDMYLAKCYVRFSKAGAHSHGGNVDHDENDEVEKTLAILVGLIAGVALLIVFLAFLRKACGKGKCKLLVYLSLHLYSSLYC VP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01660		PDLP6	plasmodesmata-located protein ...		Potri.008G133500 [exp]	0	1
					Potri.005G086300 [exp]	4.58	0.7513
AT5G16200			50S ribosomal protein-related ...		Potri.017G117866 [exp]	7.48	0.6943
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019750 [exp]	21.21	0.7329
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012700 [exp]	22.64	0.6599
AT1G64890			Major facilitator superfamily ...		Potri.013G076300 [exp]	33.49	0.6558
					Potri.001G121650 [exp]	36.16	0.5872
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.009G169500 [exp]	36.94	0.6679	PtrEXPA21,ATEXPA20.1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154500 [exp]	39.54	0.6416
AT2G32580			Protein of unknown function (D...		Potri.002G227100 [exp]	47.95	0.5903
AT5G47510			Sec14p-like phosphatidylinosit...		Potri.003G076200 [exp]	75.36	0.5768

Compare expression of checked genes

Potri.008G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.