Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01650 497 / 3e-174 PUX2 plant UBX domain-containing protein 2 (.1) AT5G35690 52 / 5e-07 unknown protein AT1G04850 47 / 2e-05 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G48690 46 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264500 [exp] 57 / 8e-09 AT3G27310 237 / 1e-78 plant UBX domain-containing protein 1 (.1) Potri.009G059300 [exp] 56 / 2e-08 AT3G27310 209 / 9e-68 plant UBX domain-containing protein 1 (.1) Potri.002G244500 [exp] 50 / 1e-06 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.014G160400 [exp] 49 / 5e-06 AT5G35690 440 / 2e-146 unknown protein Potri.001G316400 [exp] 44 / 0.0002 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.017G056900 [exp] 43 / 0.0004 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034612 [exp] 532 / 0 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10021798 [exp] 529 / 0 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10037827 [exp] 49 / 7e-06 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10017103 [exp] 49 / 8e-06 AT1G04850 573 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10002262 [exp] 47 / 4e-05 AT5G35690 585 / 0.0 unknown protein Lus10000922 [exp] 43 / 0.0005 AT5G35690 575 / 0.0 unknown protein Lus10038183 [exp] 43 / 0.0007 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09409 [poplar] [flax] PUB PUB domain
Representative CDS sequence Show only first row Show all	>Potri.008G133700.1 pacid=42807034 polypeptide=Potri.008G133700.1.p locus=Potri.008G133700 ID=Potri.008G133700.1.v4.1 annot-version=v4.1 ATGGATGACATGAAAGACAAGTTCAAAGGTTTCATGAAGAAAGTCTCTTCTTCATCTTCTCCTTCTAAATTCAAGGGCCAAGGTCGTGTCTTGGGCGGTG GTGGTTCCACTCCTTCTCAATCATCATCCGGACCTACTAATCCTCTCCATGCCCGTTATTCTCAACCTGTTAATTCAAATAATTCGAAGCCCAAGCCAAA CCCATCTTCCTCTCTTACTTCTTCTTCAAATTCCAAGCCTTTGCCTGAGAAAAGATCCAATCTTGATCAAAACAAACCCACTCCTGCCAACAAAACCACG AATGGCCTCGACCCATTTGACTCATTGATCACTACTAGCAAAAGATCTCAAAATGGATACTCGTTGAATGTGTTTGAGTGCCCAATTTGTGGGCAGTCGT ATCAATCAGAAGAAGAGGTCTCTATACATGTAGAAACCTGTGTCAATAACAGTAATGCTAATAGTCCAGTTAAAAGCAATGATCGTGTCGTTGGTGATGA TAGTGCGGTAGAAGAGTCTAGTGGGAGTGAATTGGAGACTTGTGTTAGTGCATATTTGTCAGGAAAGCCGCTGGAGGGATCGGTGGAGGTTGTGCTTAGA CTGCTGAGGAATATTGTCAAGGAGCCTGCGAATGCAAAATTTAGGAGGATTAGAATGGGGAATCCAAAGATAAGAGAGGCAGTGACTGAGGTTGCTGGAG GGGTTGAGTTATTGGAGATTGTAGGGTTTGGATTGAAGGAGGAGGGTGGAGAAATGTGGGCCATCTTGGAGGAAGCTCCTAAAGAGGAGAAAATTGGTTT GATTAATAAGGTGATAGGATTCTTAGAACCTAGGAAGGAGGAGCAGGAAGAGCCGAGGGCTGAGGCTAAGCCATCTGATGCTCCAGCTGAGACAGAGGAA CAGGTTGAGCCGAAGAAGGTTGACAGGCAGATAAGGGTCTTCTTTTCTGTCCCTGAAAATGTAGCGGCAAGAATTGAGCTGCCAGATTCATTTTACAGCC TCTCTGCTGAAGAGCTAAAAAGAGAAGCTGATATGAGGAAGAAGAAGATTGCAGAATCTCAGCTTTTGATCCCCAAGTCTTACAAAGAAAAGCAAGCAAA AGCTGGTAGGAAGAGATACAAAAGGACTATAATTCGCATCCAATTTCCTGATGGAGTGGTTCTTCAAGGTGTCTTTGCTCCTTGGGAATCAACAACTGCT CTCTACGAGTTTGTGAGCGCAGCACTAAAAGAACCTGGTTTGGAGTTCGAGCTGTTACATCCTGTTGCAGTCAAACGGAGGGTTATCCCTCATATTCCTT CAGTGGGAGAGAGAGCCACTACACTTGATGCTGAAGATTTGGTTCCTTCGGCTCTCATCAAGTTCAGACCCATTGAAACTGATTCCACTGTTTTTACAGG GCTCTGTAATGAGCTCCTTGAGATCAGTGAGCCACTGAATTGA
AA sequence Show only first row Show all	>Potri.008G133700.1 pacid=42807034 polypeptide=Potri.008G133700.1.p locus=Potri.008G133700 ID=Potri.008G133700.1.v4.1 annot-version=v4.1 MDDMKDKFKGFMKKVSSSSSPSKFKGQGRVLGGGGSTPSQSSSGPTNPLHARYSQPVNSNNSKPKPNPSSSLTSSSNSKPLPEKRSNLDQNKPTPANKTT NGLDPFDSLITTSKRSQNGYSLNVFECPICGQSYQSEEEVSIHVETCVNNSNANSPVKSNDRVVGDDSAVEESSGSELETCVSAYLSGKPLEGSVEVVLR LLRNIVKEPANAKFRRIRMGNPKIREAVTEVAGGVELLEIVGFGLKEEGGEMWAILEEAPKEEKIGLINKVIGFLEPRKEEQEEPRAEAKPSDAPAETEE QVEPKKVDRQIRVFFSVPENVAARIELPDSFYSLSAEELKREADMRKKKIAESQLLIPKSYKEKQAKAGRKRYKRTIIRIQFPDGVVLQGVFAPWESTTA LYEFVSAALKEPGLEFELLHPVAVKRRVIPHIPSVGERATTLDAEDLVPSALIKFRPIETDSTVFTGLCNELLEISEPLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01650		PUX2	plant UBX domain-containing pr...		Potri.008G133700 [exp]	0	1
AT1G21380			Target of Myb protein 1 (.1)		Potri.005G184900 [exp]	2.00	0.8886
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	4.12	0.8998
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.001G370300 [exp]	7.07	0.8448
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	10.48	0.8598
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	11.35	0.8830
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	11.48	0.8804
AT4G09760			Protein kinase superfamily pro...		Potri.005G197500 [exp]	12.00	0.8656
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	13.74	0.8742
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	14.28	0.8796	Pt-NAC2.1,NAC049
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.008G003300 [exp]	14.83	0.8600	GCN4.3

Compare expression of checked genes

Potri.008G133700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.