Plant FIBer expression Database

Pt-CABP1.1 (Potri.008G133800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-CABP1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70670 273 / 2e-94 AtCLO4 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
AT1G70680 253 / 1e-86 Caleosin-related family protein (.1)
AT1G23240 233 / 3e-78 Caleosin-related family protein (.1.2.3)
AT5G55240 190 / 4e-61 ATPXG2 ARABIDOPSIS THALIANA PEROXYGENASE 2 (.1)
AT2G33380 185 / 3e-59 AtCLO3, CLO-3, RD20 RESPONSIVE TO DESSICATION 20, Arabidopsis thaliana caleosin 3, Caleosin-related family protein (.1.2)
AT4G26740 183 / 4e-58 CLO1, ATPXG1, ATS1 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
AT5G29560 167 / 3e-52 caleosin-related family protein (.1)
AT1G23250 149 / 1e-45 Caleosin-related family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G107900
[exp]
382 / 3e-137 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Potri.010G066600
[exp]
192 / 6e-62 AT4G26740 377 / 5e-134 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034325
[exp]
237 / 9e-80 AT1G70670 197 / 3e-64 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Lus10041446
[exp]
235 / 1e-79 AT1G70670 203 / 2e-67 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Lus10014588
[exp]
204 / 3e-67 AT1G70670 197 / 6e-65 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Lus10023732
[exp]
194 / 2e-62 AT4G26740 360 / 3e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
Lus10011775
[exp]
193 / 4e-62 AT4G26740 361 / 1e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
Lus10032097
[exp]
43 / 0.0001 AT3G01650 514 / 0.0 RING domain ligase1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0220 EF_hand PF05042 Caleosin Caleosin related protein
Representative CDS sequence
>Potri.008G133800.2 pacid=42806937 polypeptide=Potri.008G133800.2.p locus=Potri.008G133800 ID=Potri.008G133800.2.v4.1 annot-version=v4.1
ATGACTTCCTCCACATTATCATCAATCGATAAGCAACAAGACGGAAAATTTGTGCCAAATGATCATAACGTACTACAGAAGCATGTTTTCTTCTTTGATA
GGAATCAAGATGGCATAGTTTATCCCTGGGAGACATTTCAAGGTTTTCGCGCAATTGGGTGTGGTATCTTATTATCCACTGCCAGTGCCCTTCTGATCAA
TATCGCTCTCAGCCAGAAAACTCGACCTGGGAAGTTTCCATCTCCATTGTTCCCTATCGAGGTTAAGAACATCCACCGAACCAAACATGGGAGTGATTCT
GGTGTGTATGACAGCGAAGGAAGGTTCGTACCTGGAAAGTTTGAAGAAATTTTCAGCAAACATGCACGTTCGCATCCAAATTCCTTGACAGCAGACGAAC
TGATGGGAATGCTCAAGGCTAACAGAGAACCTAAGGACTTTAGAGGATGGGTTGCTTCCTACACCGAATGGAAGATCCTGTACGCTCTTTGCAAGGACAA
GAATGGTTTGCTTCACGAAGATACAATTAGAGCTGCCTATGATGGAAGCCTATTTGAACACATGGAGAAGGAAAGAACTTCAGCCAAAAAGAAAGCGTAA
AA sequence
>Potri.008G133800.2 pacid=42806937 polypeptide=Potri.008G133800.2.p locus=Potri.008G133800 ID=Potri.008G133800.2.v4.1 annot-version=v4.1
MTSSTLSSIDKQQDGKFVPNDHNVLQKHVFFFDRNQDGIVYPWETFQGFRAIGCGILLSTASALLINIALSQKTRPGKFPSPLFPIEVKNIHRTKHGSDS
GVYDSEGRFVPGKFEEIFSKHARSHPNSLTADELMGMLKANREPKDFRGWVASYTEWKILYALCKDKNGLLHEDTIRAAYDGSLFEHMEKERTSAKKKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G70670 AtCLO4 Arabidopsis thaliana caleosin ... Potri.008G133800
[exp]
0 1 Pt-CABP1.1
AT4G24275 unknown protein Potri.003G006100
[exp]
5.29 0.8466
AT5G66590 CAP (Cysteine-rich secretory p... Potri.005G130100
[exp]
6.00 0.8193
AT5G54190 PORA protochlorophyllide oxidoreduc... Potri.011G122400
[exp]
11.31 0.8331 Pt-PORA.1
AT1G29660 GDSL-like Lipase/Acylhydrolase... Potri.018G089400
[exp]
14.52 0.8571
AT5G57150 bHLH bHLH035 basic helix-loop-helix (bHLH) ... Potri.006G074800
[exp]
17.34 0.7949
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Potri.002G229325
[exp]
19.97 0.8348
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Potri.001G229166
[exp]
23.23 0.8229
AT4G38620 MYB AtMYB4 myb domain protein 4 (.1) Potri.005G112000
[exp]
26.15 0.8279
AT5G52540 Protein of unknown function (D... Potri.004G079300
[exp]
27.42 0.8210
AT5G67385 Phototropic-responsive NPH3 fa... Potri.007G053200
[exp]
27.82 0.8440

Potri.008G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.