Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23260 258 / 9e-90 MMZ1 ,UEV1A UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) AT1G70660 256 / 4e-89 MMZ2 ,UEV1B UBIQUITIN E2 VARIANT 1B, MMS ZWEI homologue 2 (.1.2) AT1G70650 248 / 2e-80 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT3G52560 229 / 2e-78 MMZ4 ,UEV1D ,UEV1D-4 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) AT2G36060 224 / 2e-76 MMZ3 ,UEV1C UBIQUITIN E2 VARIANT 1C, MMS ZWEI homologue 3 (.1.2.3) AT3G13550 52 / 6e-09 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT3G46460 50 / 4e-08 UBC13 ubiquitin-conjugating enzyme 13 (.1) AT5G59300 49 / 2e-07 ATUBC7, UBC7 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) AT5G25760 48 / 3e-07 PEX4, UBC21 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) AT3G20060 46 / 7e-07 UBC19 ubiquitin-conjugating enzyme19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107700 [exp] 301 / 2e-106 AT1G23260 269 / 5e-94 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Potri.016G073100 [exp] 234 / 3e-80 AT3G52560 281 / 5e-99 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Potri.006G205700 [exp] 233 / 7e-80 AT3G52560 275 / 7e-97 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Potri.001G089300 [exp] 54 / 2e-09 AT3G13550 256 / 3e-88 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) Potri.008G053900 [exp] 49 / 1e-07 AT3G55380 287 / 7e-101 ubiquitin-conjugating enzyme 14 (.1.2) Potri.009G049600 [exp] 49 / 2e-07 AT3G20060 296 / 3e-104 ubiquitin-conjugating enzyme19 (.1.2) Potri.010G206766 [exp] 48 / 2e-07 AT3G46460 261 / 2e-90 ubiquitin-conjugating enzyme 13 (.1) Potri.008G053800 [exp] 48 / 2e-07 AT5G59300 264 / 4e-91 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Potri.010G206832 [exp] 48 / 3e-07 AT3G46460 263 / 3e-91 ubiquitin-conjugating enzyme 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021797 [exp] 264 / 1e-91 AT1G23260 268 / 3e-93 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Lus10034611 [exp] 263 / 4e-91 AT1G23260 266 / 1e-92 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Lus10029415 [exp] 229 / 2e-78 AT3G52560 290 / 7e-103 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Lus10004211 [exp] 219 / 2e-74 AT2G36060 273 / 8e-96 UBIQUITIN E2 VARIANT 1C, MMS ZWEI homologue 3 (.1.2.3) Lus10016573 [exp] 48 / 3e-07 AT5G59300 291 / 6e-102 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Lus10040844 [exp] 48 / 4e-07 AT5G59300 290 / 1e-101 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Lus10016670 [exp] 47 / 1e-06 AT5G56150 149 / 1e-46 ubiquitin-conjugating enzyme 30 (.1.2) Lus10007126 [exp] 47 / 1e-06 AT3G08690 148 / 4e-46 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009495 [exp] 46 / 2e-06 AT5G25760 273 / 1e-93 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Lus10012931 [exp] 47 / 3e-06 AT1G55320 1008 / 0.0 acyl-activating enzyme 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.008G133900.10 pacid=42806216 polypeptide=Potri.008G133900.10.p locus=Potri.008G133900 ID=Potri.008G133900.10.v4.1 annot-version=v4.1 ATGGGTTCTGAAGGATCGAGTGTTGTTGTGCCTAGGAACTTCAGACTACTGGAGGAGCTTGAGAGAGGAGAAAAGGGGATCGGAAATGGAACTGTCAGTT ATGGAATGGACGATGCTGATGATATCTACATGCAGTCATGGACAGGAACTATAATTGGCCCCCCAAATACTGTTCATGAAGGGCGTATCTACCAGTTAAA ATTGTTTTGTGGCAAGGATTATCCAGATAATCCGCCGAGTGTGAGGTTCCAAACTCGGATAAATATGGCTTGTGTCAATCCTGCAAGCGGAATGGTCGAG CCTAGTCTTTTCCCTATGCTTGCTAATTGGCAGAGGGAGTGTACAATGGAGGATATATTAACTCAGTTGAAGAAAGAAATGATGGCTCCACAAAACAGGA AGCTCACCCAGCCTCCTGAAGGAAATGAGGAGGCAAGGTTGGATCAAAAGGGGCTAGTCCTAAAGTGTTGTATTCTCTGA
AA sequence Show only first row Show all	>Potri.008G133900.10 pacid=42806216 polypeptide=Potri.008G133900.10.p locus=Potri.008G133900 ID=Potri.008G133900.10.v4.1 annot-version=v4.1 MGSEGSSVVVPRNFRLLEELERGEKGIGNGTVSYGMDDADDIYMQSWTGTIIGPPNTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINMACVNPASGMVE PSLFPMLANWQRECTMEDILTQLKKEMMAPQNRKLTQPPEGNEEARLDQKGLVLKCCIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Potri.008G133900 [exp]	0	1
AT1G61150			LisH and RanBPM domains contai...		Potri.004G037600 [exp]	2.00	0.8982
AT5G37055		ATSWC6, SEF	SERRATED LEAVES AND EARLY FLOW...		Potri.013G152600 [exp]	3.16	0.8594
					Potri.003G137900 [exp]	3.87	0.8978
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.007G078500 [exp]	4.00	0.8509
AT1G79200			unknown protein		Potri.005G095700 [exp]	4.24	0.8704
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.010G002100 [exp]	6.32	0.8893
AT5G57950			26S proteasome regulatory subu...		Potri.006G184600 [exp]	8.83	0.8551
					Potri.005G172250 [exp]	13.22	0.8870
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Potri.016G004200 [exp]	13.74	0.8463
AT3G27100			unknown protein		Potri.001G330400 [exp]	16.91	0.8453

Compare expression of checked genes

Potri.008G133900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.