Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24610 638 / 0 Rubisco methyltransferase family protein (.1) AT3G07670 69 / 2e-12 Rubisco methyltransferase family protein (.1) AT4G20130 67 / 1e-11 PTAC14 plastid transcriptionally active 14 (.1) AT1G01920 60 / 2e-09 SET domain-containing protein (.1.2) AT3G55080 54 / 1e-07 SET domain-containing protein (.1.2) AT2G18850 49 / 6e-06 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169300 [exp] 69 / 4e-12 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.003G155100 [exp] 66 / 3e-11 AT4G20130 679 / 0.0 plastid transcriptionally active 14 (.1) Potri.008G047400 [exp] 62 / 5e-10 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.008G090500 [exp] 61 / 7e-10 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.014G077700 [exp] 45 / 7e-05 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.004G081400 [exp] 43 / 0.0004 AT5G17240 543 / 0.0 SET domain group 40 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021783 [exp] 667 / 0 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10034599 [exp] 646 / 0 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1) Lus10012309 [exp] 69 / 3e-12 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016435 [exp] 62 / 6e-10 AT1G01920 680 / 0.0 SET domain-containing protein (.1.2) Lus10006942 [exp] 59 / 4e-09 AT4G20130 683 / 0.0 plastid transcriptionally active 14 (.1) Lus10016087 [exp] 54 / 2e-07 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10019677 [exp] 52 / 5e-07 AT1G01920 262 / 5e-84 SET domain-containing protein (.1.2) Lus10006953 [exp] 48 / 2e-05 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10013825 [exp] 45 / 0.0001 AT3G56570 439 / 9e-152 SET domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF09273 [poplar] [flax] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Potri.008G134200.1 pacid=42807262 polypeptide=Potri.008G134200.1.p locus=Potri.008G134200 ID=Potri.008G134200.1.v4.1 annot-version=v4.1 ATGGCTGTTTCAAAGTTTGTAATGGCCTCGCTAACCAATTGCCGTCCACTAACATGCGCTGCCACGTTCACAGCCTCATCCTATCAAGAGCGTCTGGTCC CAAACCCACCAGACCTGATCAAATGGGTGAGGCGCGAAGGTGGGTTCGTGCACCAGGCCATTAAAATATCCCAAGATGGAACCAATGGTCCTGGTTTGAT TGCCTCTCACGATATCCCAAAAGGGTCTCAGCTTATTGTCCTTCCCGATAACATACCCTTAAAATTTGGAGATGAAGATGGAGTTGACGAGGCACATTCT GTTTTGGTTAAACTGGCCCACAAAGTTCCTGATGAACTGTGGGCAATGAAATTGGGTTTGAAGCTTCTTCAAGAAAGAGCAAGGGTCAACTCCTTCTGGT GGCCATACATCAGCAACCTGCCGCGAACTTATAGCGTGCCCATATTTTTTCAAGGGGAGGATATAAAGAACTTGCAGTATGCTCCTCTTCTATACCAGGT GAATAGAAGATGCAGGTTTCTTCTTGATTTTGAACAAGAAGTCAAGCGTGCTGTTGAAAACCTGAAACAAAATGATCATCCTTTTGACAGGCAAGATGTA GATGCATCCTCTCTTGGGTGGTCAATGTCAGCAGTCTCATCCAGGGCATTTCGTTTATATGGAAAAAAGCTCCCAGATGGAACCTGCATTGATGCCCCCA TGATGCTTCCTCTCATCGACATGTGCAACCATGCCTTCAATCCAAATGCACAAATTATTCAAGAACAAGATGCAGGGAGTGCAAAGATGCTTATAAAGGC TGTGGCAGAAACACCAATCAAACAAAACGATGCCATACTACTGAATTATGGTTGCTTGAACAATGATCTTTTCCTATTGGATTATGGATTTGTGATACCT TCAAACCCTTATGATTGCATTGAGCTCAAATATGATGGAGCTTTTCTGGATGCTGCAAGTGTTGCTGCTGGGGTATCTTCACCTAAGTTCTCTTCACCAG CTCCATGGCAACAACAGTTTTTATCCCAGTTAAATTTAGACGGTGAAGCTGCAAATCTCAAGGTGACATTAGGAGGTCAAGAATTGGTAGATGGACGGTT GTTGGCAGCCCTTAGAGTACTGCTGGCAAGTGACATGGAAATGGTGCGTAAGCATGATATGGACACTCTCAAATCTTTATCAGCTGATGCTCCTCTCGGA ATTGCAAATGAAGTAGCTGCTTATCGCACCATTATTGCATTATGTGTGATCGCACTTGAGCACTTCCCTACCAAAATAATGGAAGACGAATCCTCATTGA GACAAGGTGTTTCAGCTTCCACTGAACTAGCCATCCAGTTTAGAATCCAGAAGAAATCTGTCATTATAGATGTGATGAGAGATCTAACAAGAAGAGCTAA ATCACTTTTGTCCAAGGACACAACGGCTTGTCAAGGCTAA
AA sequence Show only first row Show all	>Potri.008G134200.1 pacid=42807262 polypeptide=Potri.008G134200.1.p locus=Potri.008G134200 ID=Potri.008G134200.1.v4.1 annot-version=v4.1 MAVSKFVMASLTNCRPLTCAATFTASSYQERLVPNPPDLIKWVRREGGFVHQAIKISQDGTNGPGLIASHDIPKGSQLIVLPDNIPLKFGDEDGVDEAHS VLVKLAHKVPDELWAMKLGLKLLQERARVNSFWWPYISNLPRTYSVPIFFQGEDIKNLQYAPLLYQVNRRCRFLLDFEQEVKRAVENLKQNDHPFDRQDV DASSLGWSMSAVSSRAFRLYGKKLPDGTCIDAPMMLPLIDMCNHAFNPNAQIIQEQDAGSAKMLIKAVAETPIKQNDAILLNYGCLNNDLFLLDYGFVIP SNPYDCIELKYDGAFLDAASVAAGVSSPKFSSPAPWQQQFLSQLNLDGEAANLKVTLGGQELVDGRLLAALRVLLASDMEMVRKHDMDTLKSLSADAPLG IANEVAAYRTIIALCVIALEHFPTKIMEDESSLRQGVSASTELAIQFRIQKKSVIIDVMRDLTRRAKSLLSKDTTACQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24610			Rubisco methyltransferase fami...		Potri.008G134200 [exp]	0	1
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	5.65	0.9549
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	18.00	0.9521
AT1G32520			unknown protein		Potri.003G089900 [exp]	19.89	0.9476
AT3G16000		MFP1	MAR binding filament-like prot...		Potri.001G179600 [exp]	22.09	0.9238
AT2G33180			unknown protein		Potri.001G053700 [exp]	25.09	0.9453
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	27.85	0.9482
AT4G17540			unknown protein		Potri.003G082200 [exp]	28.24	0.8960
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	28.77	0.9338
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	29.84	0.9431	IM30.2
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	30.57	0.9478

Compare expression of checked genes

Potri.008G134200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.