Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01680 750 / 0 Ankyrin repeat family protein (.1) AT1G07710 383 / 1e-127 Ankyrin repeat family protein (.1) AT3G12360 384 / 2e-127 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G31820 384 / 3e-126 Ankyrin repeat family protein (.1) AT5G60070 372 / 4e-123 ankyrin repeat family protein (.1) AT3G09550 367 / 2e-120 Ankyrin repeat family protein (.1) AT5G02620 359 / 1e-118 ATANK1, ANK1 ankyrin-like1 (.1) AT1G05640 355 / 8e-116 Ankyrin repeat family protein (.1) AT5G54710 147 / 4e-38 Ankyrin repeat family protein (.1) AT1G34050 139 / 2e-35 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106800 [exp] 1011 / 0 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 397 / 4e-133 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 390 / 2e-129 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 384 / 4e-127 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 383 / 4e-126 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 379 / 1e-125 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 377 / 3e-125 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 372 / 3e-123 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 374 / 5e-123 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021814 [exp] 866 / 0 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 863 / 0 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 404 / 1e-135 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 404 / 2e-135 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 395 / 1e-131 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 386 / 8e-128 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 386 / 1e-127 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 369 / 1e-121 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003986 [exp] 364 / 2e-119 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 338 / 6e-110 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.008G134500.1 pacid=42806913 polypeptide=Potri.008G134500.1.p locus=Potri.008G134500 ID=Potri.008G134500.1.v4.1 annot-version=v4.1 ATGACGATGATGGAGCCATCAAAATCATCTCTACGCTTCATAGCCTACCAAAGATTCTTCACAGCCGTCCGATCAGGCGACCTTGACTCTTTGAAACAGA TAGTGGGGGAGCAGCCATCTGATGTGTCTGATCTAATGTCTTTACAGACTAATGCAGGAGAGACTGCTTTGTATATAGCTGCTGATAATAATTTGGAAGA GGTTTTTAGTTGTTTGGTAAAGCTTTGTGATTTTGAAACTGTGAAGATCAGGTCTAAGTCTGACTTGAATGCCTTCCATCTTGCTGCTAAGAAGGGTCAC TTGGGCATCGTGAAGGACCTTTTGGTCATGTGGCCTGAGCTTTGCAAGTTATGTGACTCCTCCAATACTAGCCCCCTCTATTCAGCCGCTGTTAAAGATC ACCTGGATGTGGTGAATGCCATACTGGATGTTGATGTCAGCTCAATGAGGATAGTGCGTAAAAATGAGAAAACTGCTTTGCACACAGCTGCCAGGTATGG CCTTCTTGATATGGTAAAAGTGCTTATACATCGTGATCCTGGTATTGTCTGCATCAAAGATAAGAAAGGCCAGACTGCACTCCATATGGCTGTAAAGGGT CAGAGTACTTCTGTTGTAGAGGAGATATTCCTTGCTGATCGCTCAATACTAAATGAGCGTGACAAGAAAGGTAACACGGCAGTGCACGTAGCGACAAGGA AATCGCGCCCCCAGATAATAAGCCTTTTGCTGAACTATATATCTATTGATGTTAACATCATCAATAATCAGCATGAAACTGCGATGGATTTGGCTGATAA ACTCCCATATGGAGAATCTGCCTTGGAAATCAAGGAAGCTCTCACAGAGGCTGGTGCCAAGCATGCTCGGCATGTTGGTCAAATGGATGAAGCAATGGAA CTTAAGAGGACAGTTAGTGATATCAAGCACGAGGTGCATTCACAACTTATACAAAATGAAAAAACCAACCGAAGAGTTTCTGGTATTGCAAAAGAACTAA GGAAAATCCATAGAGAAGCTGTCCAGAATACAACCAACTCTGTCACTGTTGTTGCTGTTCTTTTTGCCTCGATTGCTTTCTTGGCTATCTTCAACTTACC GGGGCAATATATACAGGATGGAGCTGAAACAGGGAAAGCTTATATAGCTGACAATGTTGGTTTTCAAGTTTTCTGCCTCTTAAATGCAACATCTCTCTTT ATATCATTAGCGGTTGTTGTGGTTCAGATCACTTTGGTGGCCTGGGACACTCAGGCTCAGAAACAGTTAGTCTCCATAGTTAACAAGCTGATGTGGGCTG CCTGTGCTTGCACTTGTGGAGCATTTCTGTCAATAGCATTTGTGGTTGTAGGAAAGAAAAGTTCTTGGATGGCTATAACCATAACTTTAACAGGGGCACC AATTCTAGTTGGGACACTAGCAAGCATGTGCTACTTTGTTTTCCGGCAGCATTTTGGAGCTTTCCGGGATTCCCAGAGGCGCATCAAAAGGGCAAGTGGA AGCAAATCGTTTTCTTGGTCAGTGTACTCGGCAAATATATCAGACCCTGATGAGTACAACTCGGATCTGGAGAAGATCTATGCTTTATAA
AA sequence Show only first row Show all	>Potri.008G134500.1 pacid=42806913 polypeptide=Potri.008G134500.1.p locus=Potri.008G134500 ID=Potri.008G134500.1.v4.1 annot-version=v4.1 MTMMEPSKSSLRFIAYQRFFTAVRSGDLDSLKQIVGEQPSDVSDLMSLQTNAGETALYIAADNNLEEVFSCLVKLCDFETVKIRSKSDLNAFHLAAKKGH LGIVKDLLVMWPELCKLCDSSNTSPLYSAAVKDHLDVVNAILDVDVSSMRIVRKNEKTALHTAARYGLLDMVKVLIHRDPGIVCIKDKKGQTALHMAVKG QSTSVVEEIFLADRSILNERDKKGNTAVHVATRKSRPQIISLLLNYISIDVNIINNQHETAMDLADKLPYGESALEIKEALTEAGAKHARHVGQMDEAME LKRTVSDIKHEVHSQLIQNEKTNRRVSGIAKELRKIHREAVQNTTNSVTVVAVLFASIAFLAIFNLPGQYIQDGAETGKAYIADNVGFQVFCLLNATSLF ISLAVVVVQITLVAWDTQAQKQLVSIVNKLMWAACACTCGAFLSIAFVVVGKKSSWMAITITLTGAPILVGTLASMCYFVFRQHFGAFRDSQRRIKRASG SKSFSWSVYSANISDPDEYNSDLEKIYAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01680			Ankyrin repeat family protein ...		Potri.008G134500 [exp]	0	1
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	1.41	0.7988
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.006G020900 [exp]	3.46	0.7640	POP2.2
AT1G52530			unknown protein		Potri.001G201700 [exp]	4.00	0.7920
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Potri.004G038800 [exp]	5.91	0.7372
AT4G06599			ubiquitin family protein (.1)		Potri.003G011300 [exp]	7.14	0.7797
AT1G76560		CP12-3	CP12 domain-containing protein...		Potri.002G002700 [exp]	8.00	0.7372
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.015G048300 [exp]	9.74	0.7134
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.003G083600 [exp]	13.00	0.7220
					Potri.001G092600 [exp]	13.41	0.7339
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.019G035100 [exp]	13.41	0.7188

Compare expression of checked genes

Potri.008G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.