Plant FIBer expression Database

Potri.008G134600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01690 1070 / 0 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G106700
[exp]
1211 / 0 AT2G01690 1076 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034578
[exp]
1160 / 0 AT2G01690 1164 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10021813
[exp]
1117 / 0 AT2G01690 1112 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10001587
[exp]
1065 / 0 AT2G01690 1096 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10003702
[exp]
1051 / 0 AT2G01690 1093 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10003679
[exp]
630 / 0 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11916 Vac14_Fig4_bd Vacuolar protein 14 C-terminal Fig4p binding
Representative CDS sequence
>Potri.008G134600.1 pacid=42808707 polypeptide=Potri.008G134600.1.p locus=Potri.008G134600 ID=Potri.008G134600.1.v4.1 annot-version=v4.1
ATGACCGACGCCGTGATTCCTCCCGCCGTACTTCGTAATCTCTCCGATAAGCTCTATGAGAAGCGAAAGAATGCGGCTCTCGAGGTCGAGGGAATTGTGA
AGTCGCTGGCGGCCGCCGGGGATCACGAGAAGATATCGATAGTCATCAATTTGTTGACCAACGAATTCACCGCCTCAGCCCAAGCCAACCACCGCAAGGG
AGGATTGATAGGACTAGCAGCTGCAACAGTAGGGTTAACTTCAGACGCAGCCCAACATCTCAGTCAAATTGTGCCACCTGTACTTGAATCTTTTGTAGAC
CAAGATAGCAGAGTTCGTTATTATGCTTGTGAAGCTCTGTATAACATTGCTAAGGTGGTTAGAGGAGATTTTATTATTTTCTTTAACCGTATTTTTGATG
CCTTATGTAAACTTTCGGCAGATTCAGATCCCAATGTACAAAGCGCTGCTCATCTTTTGGATCGGCTTGTAAAGGACATCGTTACTGAAAGCGATCAATT
CAGCATTGAAGAATTTATACCGTTGTTGAGAGAACGTATGAATGTCCTAAATCCCTATGTCCGGCAATTTTTGGTGGGATGGATTACTGTATTGGACAGT
GTTCCAGATATAGATATGCTGGGTTTTCTTCCTGATTTTCTAGATGGTTTGTTCAATATGCTGAGCGATTCTAGCCATGAAATACGACAACAAGCTGATT
CTGCTCTTTCAGAGTTTCTTCAAGAAATTAAGAACTCCCCATCTGTAGATTATGGTCGTATGGCTGAAATACTGGTTCAGAGAGCAGCTTCTCTAGATGA
ATTCACACGGTTAACAGCTATTACTTGGATAAATGAGTTTGTGAAACTTGGTGGTGAACAACTTGTTCCTTATTATGCTGATATTCTAGGAGCCATTCTG
CCTTGCATTTCCGACAAAGAAGAGAAAATTAGAGTGGTTGCTCGTGAAACCAATGAAGAGCTCCGTGCAATCAAGGCTGATCCTGCCGATGGATTTGATG
TTGCAGCAATTCTCTCCATTGCAAGGAGGCAATTATCGAGTGAGTGGGAGGCTACTCGAATTGAAGCATTGCACTGGATATCAACCCTTTTAAACGGACA
CCGTATTGAGGTCTTGTCTTTTCTAAATGACATATTTGATACCCTTCTCAAAGCACTGTCAGATCCATCTGATGAGGTGGTACTCCTTGTTCTTGAGGTT
CATGCATGCATAGCGAAAGATCCGCAACACTTCCGCCAACTTGTTGTTTTCTTGGTGCATAATTTCCGCAATGATCATTCTCTTCTAGAGAAGCGCGGTG
CTTTGATAATCCGACGACTCTGTGTTCTTTTAGATGCTGAAAGGATCTATCGTGAACTTTCTACAATATTAGAGGGGGAAGCTGACCTGGATTTTGCATC
TATCATGGTTCAGGCTTTGAATTTGATTTTACTCACATCCTCTGAGTTATCTGAGCTTCGAGATCTCTTAAAACAATCTCTGGTGAATTCTGCTGGGAAA
GATTTATTTGTTTCTTTATATGCTTCATGGTGCCATTCGCCCATGGCAATTATAAGCCTTTGTTTATTAGCACAGACTTATCAGCATGCCAGTACTGTGA
TTCAGTCACTGGTAGAGGAAGATATCAACGTCAAATTCTTGGTACAGCTGGATAAATTAATTCGTTTGCTGGAAACTCCCATCTTTGCTTACCTTAGATT
GCAGCTTCTTGAACCTGGAAGATATACATGGTTGTTAAAAGCTTTAAATGGTCTTCTGATGCTGCTCCCACAGCAAAGTGCCGCTTTTAAGATGCTGCGA
ACTCGTTTAAAAACTGTTCCTTCATATTCCTTCAGTGGTGATCAAGTCAAGCGAACATCTTTAGGAAACCCTTACTCTCAGATTCTACATCACATTCCAT
GTGGATCACATATCTCTGAGGATGGTGATGTAAACCAGGATGTAGGGGCTTCTAATTTGCATAATGGAATTAACTTCACTTCAAGGCTGCATCAGTTTGT
GCAAATGCAACGTCAACACCGAATGCATGCAAAAGTGCAGGCACAGTCTCACAACAGTTCCACTTCATCATCAAAGGATGTACAAAGATCAGAGGAATCG
GGGCACCAACTTCCTTTGGATAATAGTGAGCCTCCTTCAAGATCATCTAGAAAAGGCCCAGGGCAGCTACAACTTTAA
AA sequence
>Potri.008G134600.1 pacid=42808707 polypeptide=Potri.008G134600.1.p locus=Potri.008G134600 ID=Potri.008G134600.1.v4.1 annot-version=v4.1
MTDAVIPPAVLRNLSDKLYEKRKNAALEVEGIVKSLAAAGDHEKISIVINLLTNEFTASAQANHRKGGLIGLAAATVGLTSDAAQHLSQIVPPVLESFVD
QDSRVRYYACEALYNIAKVVRGDFIIFFNRIFDALCKLSADSDPNVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS
VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASLDEFTRLTAITWINEFVKLGGEQLVPYYADILGAIL
PCISDKEEKIRVVARETNEELRAIKADPADGFDVAAILSIARRQLSSEWEATRIEALHWISTLLNGHRIEVLSFLNDIFDTLLKALSDPSDEVVLLVLEV
HACIAKDPQHFRQLVVFLVHNFRNDHSLLEKRGALIIRRLCVLLDAERIYRELSTILEGEADLDFASIMVQALNLILLTSSELSELRDLLKQSLVNSAGK
DLFVSLYASWCHSPMAIISLCLLAQTYQHASTVIQSLVEEDINVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALNGLLMLLPQQSAAFKMLR
TRLKTVPSYSFSGDQVKRTSLGNPYSQILHHIPCGSHISEDGDVNQDVGASNLHNGINFTSRLHQFVQMQRQHRMHAKVQAQSHNSSTSSSKDVQRSEES
GHQLPLDNSEPPSRSSRKGPGQLQL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01690 ARM repeat superfamily protein... Potri.008G134600
[exp]
0 1
AT5G08560 transducin family protein / WD... Potri.002G055800
[exp]
2.82 0.8192
AT3G11130 Clathrin, heavy chain (.1) Potri.001G278800
[exp]
3.87 0.8676
AT3G54190 Transducin/WD40 repeat-like su... Potri.013G091600
[exp]
5.00 0.7662
AT5G49830 EXO84B exocyst complex component 84B ... Potri.010G249900
[exp]
5.47 0.8122
AT5G11040 AtTRS120 TRS120 (.1) Potri.018G022500
[exp]
6.70 0.8210
AT3G55480 AP-3beta, PAT2 beta-subunit of adaptor protei... Potri.010G202800
[exp]
10.24 0.7487
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.014G014700
[exp]
11.31 0.8018 Pt-ECA3.3
AT3G43300 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFF... Potri.006G216900
[exp]
11.74 0.8306
AT2G02860 ATSUT2, ATSUC3,... ARABIDOPSIS THALIANA SUCROSE T... Potri.008G148100
[exp]
13.74 0.8065 Pt-SUC3.2
AT4G10050 esterase/lipase/thioesterase f... Potri.019G072900
[exp]
13.96 0.7428

Potri.008G134600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.