Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14850 2052 / 0 NUP155 nucleoporin 155 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003701 [exp] 1069 / 0 AT1G14850 990 / 0.0 nucleoporin 155 (.1) Lus10001586 [exp] 1058 / 0 AT1G14850 985 / 0.0 nucleoporin 155 (.1) Lus10003700 [exp] 840 / 0 AT1G14850 811 / 0.0 nucleoporin 155 (.1) Lus10001585 [exp] 785 / 0 AT1G14850 779 / 0.0 nucleoporin 155 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03177 [poplar] [flax] Nucleoporin_C Non-repetitive/WGA-negative nucleoporin C-terminal CL0186 [poplar] [flax] Beta_propeller PF08801 [poplar] [flax] Nucleoporin_N Nup133 N terminal like
Representative CDS sequence Show only first row Show all	>Potri.008G134800.1 pacid=42806299 polypeptide=Potri.008G134800.1.p locus=Potri.008G134800 ID=Potri.008G134800.1.v4.1 annot-version=v4.1 ATGTCGTGGGAGGAAGAAGTTGTGATCCGCGATGTCACCAACGCCGGTATCGTCGTAAGCGACCGTATTGGTAGAGAGGTTGCAGCTCAGATCGATCTCG AAGAAGCTCTAGAAGCTTCTAGATACGCGAGCCATCCTTATTCCACTCATCCTCGCGAGTGGCCACCTTTAATTGAGGTGGAGGATACTCAGGAGTTGCC TCCCGTACTCGTTGAAAGATATAATGCAGCTGGCGGAGAAGCGACTGCTTTGTGTGGAATATTTCCTGAGGTACGGAGGGCTTGGGCATCGGTGGATAAT TCTTTGTTTCTATGGCGTTTCGATAAGTGGGATGGTCAATGTCCTGAATACAGCGAGGAACAAGCCATCTGTGCTGTCGGCCTTGCCAAATCTAAGCCTG GTGTTTTTGTTGAAGCTATCCAGTATCTTTTGGTTTTATCTACACCAGTGGAGTTGGTTCTTGTAGGAGTATGCTGTTCCGGGTCAGGCGATGGTGCGGA TCCATATGCTGAGGTTTCCTTACAGCCTTTGCCAGAGTATACAGTACCATCTGATGGAGTTACCATGACCTGTATTGTGTGTACTGATAGGGGACGCATC TTCCTTTCTGGGCGCGATGGACACATTTATGAGTTGCATTACACTACTGGTTCGGGATGGCACAAGCGATGTCGTAAAGTTTGCCTGACAGCTGGATTGG GTAGTGTTATTTCAAGGTGGGTTGTACCAAATGTGTTCAAGTTTGGAGCTGTTGATCCTATTGTTGAAATGGTTGTTGACAATGAAAGACAGATTTTGTA TGCACGAACAGAAGAGATGAAACTTCAGGTTTATCTTCTGGAATCAAATGGAGATGGTCCGCTGAAGAAAGTGGCAGAAGAAAGAAATTTGTTCAGTCAA AGAGATGCACATTATGGAGGCAGACCATCAGCAGGACCAAGAGTCCCAAGTAGATCAGCAAAGCCATCTATAGCTTGCATCTCTCCTTTATCCACACTGG AATCCAAGTGGTTGCACCTTGTTGCTGTTTTATCAGATGGCAGAAGGATGTACATTTCTACTTCCCCATCTAGTGGCAATAATGGAGCTGTTGGAGGTTT GGGTGGATTCGGTACCAACCATCAGAAGCCGAACTGTTTAAAAGTTGTAACAACTAGACCTTCTCCTCCTTTAGGGGTCAGTGGTGGACTTGCCTTTGGG GCCATTTCTCTTGCCAATAGAACTCCAAATGAGGATCTCACACTAAAAGTTGAAACAGCATCCTACTCTGCTGGAACTCTTGTCCTCTCTGATTCATCAC CACCAACCACGTCTTCTCTTGTCATCGTGAGCAAGGATTCAAGCTCACAGACATCTGTTTCGGGTAGCTTAGGTACAAGTTCAAGGGGTTCACGGGCTTT ACGGGAAACCGTATCTTCGGTACCTGTTGAAGGACGAATGCTTTTTGTTGCAGATGTTTTACCTTTACCAGATACAGCTGCCATGTTGCAGTCACTATAT TCAGAACTTGATTGTTTTGGATTCCAAAGCGCATGTGAGCCCTGTGAAAAAGCATCTATAAAACTTTGGGCAAGAGGTGATCTTGCAATGCAACATGTAC TTCCAAGGCGAAGAGTCATCATTTTCAGCACCATGGGAATGATTGAAGTGGTTTTCAACAGGCCCGTAGACATTCTGCGAAGGTTGTTTGAGTCCAACTC CCCTAGATCAATCTTGGAGGATTTCTTTAATCGTTTTGGATCTGGTGAGGCAGCTGCAATGTGTTTAATGCTAGCTGCAAGGATAGTGCATTCTGAAAAT CTTATAAGCAATCAAGTTGCTGAGAAGGCAGCTGAAACATATGAGGATCCAAGAGTTGTTGGAATGCCACAACTTGAAGGCAGCAATGTACTGTCAAACA CTAGAACAGCAACAGGAGGTTTTAGCATGGGACAGGTTGTTCAGGAGGCTGAGCCTGTGTTTTCGGGTGCTCATGAAGGGCTCTGCTTGTGCTCTTCAAG GTTGCTTTTACCTGTCTGGGAACTCCCTGTGTTCGTCTCAAAAGGTGATGTAGGTCCATCTGATGCTTCATTTGAAAATGGAGTGGTTGGATGTAGACTC TCAGTTGGGGCTATGCAAATCCTAGAAAACAAGGTTCGTTCTTTAGAGAAGTTCCTTAAGTCCAGAAGGAACCAGAGAAGGGGGCTTTATGGTTGTGTAG CAGGTTTGGGAGACTTGACTGGTTCTATATTGTATGGAGCTGGTTCAGATTCAGGTACTGGTGACAGAAGTATGGTGAGAAACTTATTTGGCACATATCC ACAAAGTGTAGAGGCAAATGGTGGTGGGGCAACTAATAAACGTCAGCGACTACCATACAGTCCTGCAGAATTGGCTGCCATGGAGGTCAGGGCAATGGAG TGCATCAGGCAATTGCTTCTTAGATCTGGGGAAGCTCTGTTTCTGCTACAGCTCCTTTCTCAACATCATATAACACGTGTGGTTCAGGGGCTTGATGCTA GTATACGACAGAGTCTGGTTCAATTGACATTCCATCAACTGGTTTGTTCTGAGGAGGGTGATCGCCTTGCTACAATGCTGATTGCTGTCTTAATGGAGTA CTATACTGGCCCTGATGGCAGGGGAACAGTAGATGATATTAGTGGGAAATTACGGGAGGGTTGTCCAAGCTACTTCAAGGAGTCTGATTACAAGTTTTTC TTAGCTGTTGAATGTCTCGAAAGAGCTGCCGCAACTCCAGATCCTGTAGAGAAGGAGAATATTGCTAGAGAAGCCTTCAATTTCTTGAGCAAAGTTCCGG AGTCTGCAGATTTAAGAACTGTTTGCAAACGGTTTGAGGATTTAAGGTTTTATGAAGCTGTGGTTCGCTTACCTCTGCAAAAAGCACAGGCTCTTGACCC TGCAGGTGATGCTTTCAATGAGCAACTTGATGCAGCTACTAGAGAATATGCACTTGCTCAGCGTGAACAATGCTATGAGATAATTACCAGTGCTTTGCAT TCTCTGAAAGGTGAGGCCTCACAAAAGGAATTTGGATCGCCAGTCAGACCTGCTTCAACTCGACCTGCACTTGATCAGGCTTCTCGGAAGAAATACGTAT GCCAGATTGTTCAGCTTGCTGTCCAATCTCCTGACAGAGTATTTCATGAGTACCTATACTGGACTATGATTGATTTGGGCCTGGAAAATGAGCTGCTGGA GTATGGAGGTCCAGATTTAGTACCATTTTTGCAAAGAGCTGGTCGGGAACCTTTACAAAAGGTTCATGCTGTTTCTGCCATAACACCTGCATCTTCTCCA ATTGGTCATTCAGGAGCACCAATTGCTTCTAATCAAGCAAAATGTTTTGATCTGTTGGCACGGTATTATGTCCTGAAGAGGCAACACATACTTGCTGCTC ACGTGTTGTTAAGGCTGGCTGAAAGACGCTCAACTGATGCTGGAGATGCTCCTAGTCTTGAACAAAGGCGCCAATACCTAAGTAATGCGGTTCTGCAGGC CAAGAATGCTAGTGACAGTGGTGTTGTGGTAGGTTCTACAAGGGGTGCTATGGACACTGGATTGCTTGATTTGCTTGAGGGGAAGCTTGCGGTTCTTCGG TTTCAAATAAAAATAAAAGATGAACTGGAGGCTATAGCGTCCAGGCTACAATCTTCATCTGACATGTCTGAGGCTGTCCAAAATGGATCAGCTCATGATA GCAATGCTGAAGCAGAGCAGGCAAAAATTGCAAGGGAAAAGGCAAAAGAGTTATCATTGGATTTAAAGAGCATAACTCAGCTCTATAATGAATATGCAGT TCCTTTTGAACTTTGGGAGATATGTCTGGAGATGCTATACTTTGCAAATTATTCTGGTGACGCTGATAGTAGCATTGTAAGAGAAACCTGGGCTAGACTA ATTGATCAAGCTCTTTCAAGGGGTGGTGTTGTGGAAGCTTGTTCGGTTCTGAAGAGGGTTGGTTCCTACATGTATCCTGGAGATGGAGCTCTTCTACCTT TAGACACCTTATGTCTTCACCTTGAGAAGGCTGCACTGGAGAGACTGGAATCAGGGGTGGAAACTGTTGGAGATGAAGACATAGCAAGAGCTCTTCTTGC TGCTTGCAAGGGTGCGATTGAACCTGTGTTGAACACTTATGATCAGTTATTATCAAATGGAGCTATTTTGCCATCTCCCAACCTTAGGCTACGCCTTCTG CGATCAGTGCTTGTGGTAATCCGTGAATGGGCAATGTCTGTTTTTGCACAGAGGATGGGTACAAGTGCAGCTGGCGCTTCATTAATATTAGGCGGATCAT TCTCAGTGGAACAAACTGCAGTCATCAATCAAGGGATTCGCGATAAGATCACAAGTGCAGCAAACAGGTACATGACAGAGGTGAGGAGGTTGCCCCTTCC CCAGGGCAGGACCGAAGCTGTTTACCAAGGATTTCGAGAACTTGAAGAGTCCCTGATAAGTCCTTTTTCTTTTGACAGATTTTGA
AA sequence Show only first row Show all	>Potri.008G134800.1 pacid=42806299 polypeptide=Potri.008G134800.1.p locus=Potri.008G134800 ID=Potri.008G134800.1.v4.1 annot-version=v4.1 MSWEEEVVIRDVTNAGIVVSDRIGREVAAQIDLEEALEASRYASHPYSTHPREWPPLIEVEDTQELPPVLVERYNAAGGEATALCGIFPEVRRAWASVDN SLFLWRFDKWDGQCPEYSEEQAICAVGLAKSKPGVFVEAIQYLLVLSTPVELVLVGVCCSGSGDGADPYAEVSLQPLPEYTVPSDGVTMTCIVCTDRGRI FLSGRDGHIYELHYTTGSGWHKRCRKVCLTAGLGSVISRWVVPNVFKFGAVDPIVEMVVDNERQILYARTEEMKLQVYLLESNGDGPLKKVAEERNLFSQ RDAHYGGRPSAGPRVPSRSAKPSIACISPLSTLESKWLHLVAVLSDGRRMYISTSPSSGNNGAVGGLGGFGTNHQKPNCLKVVTTRPSPPLGVSGGLAFG AISLANRTPNEDLTLKVETASYSAGTLVLSDSSPPTTSSLVIVSKDSSSQTSVSGSLGTSSRGSRALRETVSSVPVEGRMLFVADVLPLPDTAAMLQSLY SELDCFGFQSACEPCEKASIKLWARGDLAMQHVLPRRRVIIFSTMGMIEVVFNRPVDILRRLFESNSPRSILEDFFNRFGSGEAAAMCLMLAARIVHSEN LISNQVAEKAAETYEDPRVVGMPQLEGSNVLSNTRTATGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLLPVWELPVFVSKGDVGPSDASFENGVVGCRL SVGAMQILENKVRSLEKFLKSRRNQRRGLYGCVAGLGDLTGSILYGAGSDSGTGDRSMVRNLFGTYPQSVEANGGGATNKRQRLPYSPAELAAMEVRAME CIRQLLLRSGEALFLLQLLSQHHITRVVQGLDASIRQSLVQLTFHQLVCSEEGDRLATMLIAVLMEYYTGPDGRGTVDDISGKLREGCPSYFKESDYKFF LAVECLERAAATPDPVEKENIAREAFNFLSKVPESADLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAFNEQLDAATREYALAQREQCYEIITSALH SLKGEASQKEFGSPVRPASTRPALDQASRKKYVCQIVQLAVQSPDRVFHEYLYWTMIDLGLENELLEYGGPDLVPFLQRAGREPLQKVHAVSAITPASSP IGHSGAPIASNQAKCFDLLARYYVLKRQHILAAHVLLRLAERRSTDAGDAPSLEQRRQYLSNAVLQAKNASDSGVVVGSTRGAMDTGLLDLLEGKLAVLR FQIKIKDELEAIASRLQSSSDMSEAVQNGSAHDSNAEAEQAKIAREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYSGDADSSIVRETWARL IDQALSRGGVVEACSVLKRVGSYMYPGDGALLPLDTLCLHLEKAALERLESGVETVGDEDIARALLAACKGAIEPVLNTYDQLLSNGAILPSPNLRLRLL RSVLVVIREWAMSVFAQRMGTSAAGASLILGGSFSVEQTAVINQGIRDKITSAANRYMTEVRRLPLPQGRTEAVYQGFRELEESLISPFSFDRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14850		NUP155	nucleoporin 155 (.1)		Potri.008G134800 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	1.73	0.8793
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Potri.009G156400 [exp]	2.64	0.8318
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	3.00	0.8755
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.004G226700 [exp]	3.46	0.8682
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G178000 [exp]	3.87	0.8622
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.002G117500 [exp]	10.00	0.7735
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.008G008100 [exp]	11.61	0.8212
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	13.03	0.8205
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	16.43	0.8195
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.009G034900 [exp]	18.97	0.8187

Compare expression of checked genes

Potri.008G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.