Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68070 392 / 1e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 354 / 2e-121 RIE1 RING-finger protein for embryogenesis (.1) AT4G11680 249 / 1e-79 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 245 / 4e-79 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT3G61180 246 / 5e-79 RING/U-box superfamily protein (.1) AT1G63170 231 / 5e-73 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT5G55970 87 / 7e-19 RING/U-box superfamily protein (.1.2) AT4G26580 86 / 1e-18 RING/U-box superfamily protein (.1.2) AT4G32600 86 / 3e-18 RING/U-box superfamily protein (.1) AT1G80400 81 / 9e-17 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106300 [exp] 473 / 4e-168 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G123300 [exp] 241 / 9e-77 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.014G075000 [exp] 212 / 1e-65 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.002G155200 [exp] 212 / 1e-65 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 99 / 6e-23 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 94 / 3e-21 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 86 / 1e-18 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 84 / 5e-18 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 70 / 6e-13 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021801 [exp] 392 / 9e-136 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034587 [exp] 394 / 2e-134 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10041359 [exp] 235 / 2e-74 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 221 / 6e-69 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10006313 [exp] 203 / 3e-62 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10029582 [exp] 164 / 1e-47 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10008106 [exp] 101 / 5e-24 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10013144 [exp] 92 / 1e-20 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10017750 [exp] 86 / 2e-18 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10033075 [exp] 85 / 2e-18 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.008G134900.1 pacid=42807008 polypeptide=Potri.008G134900.1.p locus=Potri.008G134900 ID=Potri.008G134900.1.v4.1 annot-version=v4.1 ATGTCAACCGAGAATGAACCCCACGCGCCACTGCTCCGCCCTCGCCAAGACCCTCCGACCTCCCCAACATCCCGCCAAACCACCCTATCCGCCCTCCTAG GCCGAGCCACCGGACGACGCGGCCCCTCCATGCTGGTAAGAGAAACAGCGGCGCGTGAGCTGGATGAGAGACGCGCCGACTGGGGGTACTCGAAGCCGGT TGTGTCATTAGACATGATGTGGAACGCAGCGTTCGTGGTGGTGTCGGTAACGATGCTTCTGGTGACGGTGAAGGAGAGGCCGAACACACCGATAAGGATA TGGATCTGTGGGTACGCGTTGCAGTGTCTGGTGCATGTCGTTTTGGTGTGGCTGGAGTATAGGAGAAGGAATACGCGAAGAGAGAGAGATATAGAGAGCC AGCAACAGTCAACTGAGGAAGAGAATGTTCCTGAGAGTGACGAAGAGGATGACAGGGCTTCTTTCATTTCTCCTAGATCAAGCGTTACTAAAAGATGTGA ATCGGTGAATACGATGGTGTCATTTCTTTGGTGGATGGTTGGCTTTTATTGGGTAGTCTCTGGTGGCGATGTCCTTTTGCAAAATGCTCCACATTTGTAC TGGCTGGCTGTGGTTTTTCTCGCGTTTGATGTGTTCTTTGCGATCTTTTGTGTTGTTTTGGCATGTTTGATTGGGATCGCTCTCTGTTGCTGCTTGCCAT GCATTATTGCTATTCTTTATGCTGTTGCGGGGCAGGAAGGTGCATCAGAAGCAGATCTCATTCAGCTGCCAAAATACAAATTTCAAATGATACGCAATGA GGAAAAGCCTGGCATTGAGGCAGGGAAAATGGTTCCTGTTGAAACAAGTAGCAGATTTTTGGGAACTGAGCGTATACTTTTACCTGAGGATGCAGAATGC TGTATATGTCTCAGCCCATATGAGGATGGAGCAGAACTCCATGCACTCCCTTGCAACCATCATTTCCATGCTACATGCATTGTGAAATGGCTTAAGATGA ATGCAACATGTCCTCTCTGCAAGTTCAACATTCTCAAGGGAAATGAACAAGCATGA
AA sequence Show only first row Show all	>Potri.008G134900.1 pacid=42807008 polypeptide=Potri.008G134900.1.p locus=Potri.008G134900 ID=Potri.008G134900.1.v4.1 annot-version=v4.1 MSTENEPHAPLLRPRQDPPTSPTSRQTTLSALLGRATGRRGPSMLVRETAARELDERRADWGYSKPVVSLDMMWNAAFVVVSVTMLLVTVKERPNTPIRI WICGYALQCLVHVVLVWLEYRRRNTRRERDIESQQQSTEEENVPESDEEDDRASFISPRSSVTKRCESVNTMVSFLWWMVGFYWVVSGGDVLLQNAPHLY WLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLIQLPKYKFQMIRNEEKPGIEAGKMVPVETSSRFLGTERILLPEDAEC CICLSPYEDGAELHALPCNHHFHATCIVKWLKMNATCPLCKFNILKGNEQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68070			Zinc finger, C3HC4 type (RING ...		Potri.008G134900 [exp]	0	1
AT5G32440			Ubiquitin system component Cue...		Potri.018G127200 [exp]	5.91	0.7035
AT5G66050			Wound-responsive family protei...		Potri.005G105900 [exp]	15.58	0.7260
AT3G59490			unknown protein		Potri.017G028900 [exp]	16.85	0.7262
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.012G080100 [exp]	19.07	0.6583
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Potri.003G174000 [exp]	38.15	0.6822
AT5G24130			unknown protein		Potri.015G021300 [exp]	44.00	0.6810
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	48.96	0.5969
AT2G46690			SAUR-like auxin-responsive pro...		Potri.015G006800 [exp]	51.00	0.7031
AT5G63220			unknown protein		Potri.010G217400 [exp]	60.28	0.5847
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G166300 [exp]	67.82	0.6664

Compare expression of checked genes

Potri.008G134900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.