Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24764 805 / 0 ATMAP70-2 microtubule-associated proteins 70-2 (.1) AT1G68060 803 / 0 ATMAP70-1 microtubule-associated proteins 70-1 (.1) AT2G01750 744 / 0 ATMAP70-3 microtubule-associated proteins 70-3 (.1.2) AT1G14840 738 / 0 ATMAP70-4 microtubule-associated proteins 70-4 (.1.2) AT4G17220 335 / 6e-108 ATMAP70-5 microtubule-associated proteins 70-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106100 [exp] 986 / 0 AT1G68060 751 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.006G039200 [exp] 666 / 0 AT1G24764 648 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.016G036300 [exp] 657 / 0 AT1G68060 619 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.016G006900 [exp] 365 / 5e-119 AT4G17220 453 / 1e-154 microtubule-associated proteins 70-5 (.1) Potri.006G018000 [exp] 363 / 5e-118 AT4G17220 464 / 5e-159 microtubule-associated proteins 70-5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030758 [exp] 844 / 0 AT1G24764 918 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10013238 [exp] 842 / 0 AT1G24764 910 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10019171 [exp] 487 / 3e-168 AT1G24764 546 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10038790 [exp] 378 / 2e-124 AT4G17220 473 / 5e-163 microtubule-associated proteins 70-5 (.1) Lus10000642 [exp] 360 / 7e-120 AT1G24764 403 / 1e-136 microtubule-associated proteins 70-2 (.1) Lus10003908 [exp] 62 / 1e-11 AT4G17220 98 / 3e-25 microtubule-associated proteins 70-5 (.1) Lus10039069 [exp] 61 / 3e-11 AT1G24764 71 / 8e-16 microtubule-associated proteins 70-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07058 [poplar] [flax] MAP70 Microtubule-associated protein 70
Representative CDS sequence Show only first row Show all	>Potri.008G135100.2 pacid=42806027 polypeptide=Potri.008G135100.2.p locus=Potri.008G135100 ID=Potri.008G135100.2.v4.1 annot-version=v4.1 ATGGCGGGGGTTTACGGCGAGGGGACGGCGGTTCTTGAGGTTAATGGTGGAGGTACGGCCACGACGCCGACGCCGCTTACTGTGTCTGGATCTTTTAAGG AAGGGCCGAAGAGCTCGTCGAGGAGGCGGGCATCGGTCAGGCCTAGCTTTGATGCAGACAACGAGTTCATGACGTTGCTTCATGGGTCGGATCCGGTTAA GGTGGAGCTTAATCGGCTTGAGAATGAAGTTAGAGATAAGGATAGAGAGCTGGGTGAAGCACAAGCCGAGATCAAGGCGTTGAGGTTCTCTGAGAGACTT AGAGAGAAGGCTGTCGAGGAGCTCACTGATGAACTCTCGAAGGTGGATGAGAAGCTCAAGTTAATGGAATCACTTCTAGAAAGCAAAAATCTTGAAATAA AAAAAATCAACGATGAGAAGAAGGCCTCTATGGCAGCTCAGTTTGCTGCTGAAGCCACTCTTCGTAGAGTTCATGCTGCTCAGAAGGATGATGACATGCC TCCAATTGAAGCCATTCTTGCACCTCTGGAAGCTGAGCTTAAGCTGGCTCGCCAAGAGATTGCAAAACTTCAAGATGATAACAAAGCATTGGATCGTCTA ACAAAATCTAAAGAAGCAGCTTTAATCGAGGCTGAAAGAACAGTTCAAGTTGCCTTGGCTAAGGCCTCCATGGTGGATGATCTCCAAAATAAGAACCAGG AGTTAATGAAGCAGATAGAAATTTGTCAGGAAGAAAACAAAATCTTGGACAAAATGCATAGACAAAAGGTTGCAGAGGTTGAAAAACTGACTCAAACTGT AAGGGAACTGGAAGAGGCTGTTCTTGCTGGTGGTGCAGCAGCAAATGCTGTGAGGGACTACCAGCGGAAAGTTCAGGAGATGAATGAGGAAAGAAAAACT CTTGACCGGGAATTGGCCCGTGCAAAGGTAACAGCAAACAGAGTAGCCACAGTGGTAGCAAATGAGTGGAAAGATGCTAATGACAAAGTGATGCCTGTAA AACAATGGCTTGAAGAGCGAAGATTTTTGCAGGGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAACGGAGAGGACTGCAAAGTCAGAAGCACAGTT GAAAGAGAAATATCAGCTGCGTCTTAAAGTGCTTGAAGAGAGCCTAAGAGGGTCTTCAAGTAATAATCGTAGCACGCCAGAGGGAAGGGGTATAAGCAAT GGGCCTTCTCGTCGACAGTCCTTAGGTGGTGCTGATAACATCTCAAAATTGACCTCCAATGGCTTTTTGTCCAAGAGAACTCAGTCAAGATCTTTGTCCT CTAGCACTAGTTCAGTGCTGAAGCATGCTAAAGGAACATCAAAGTCGTTTGATGGGGGCACAAGATCATTGGACAGGAGTAGGAAATTGCTCTTAAATGG GGCTGGCCAAAATCATTCATTCAACCAACCTTGTGATGGAACCAAGGACACTGAGACACCTAGTCCGTGGAAAGGAAACTCGGATGAAAAACCCAATGAA TTCCCACTGGCAGATACAGAGGATAGTGTCCCTGGAATATTGTATGAATTGCTGCAAAAACAGGTTGTAGCTTTGAGGAAAGCTGGTCATGAAAAAGATC AAAGCCTCAAAGATAAGGATGATGCAATTGAGATGTTAGCGAAGAAGGTGGAGACATTAACTAAGGCAATGGAAGTTGAGGCAAAGAAGATGAGAAGAGA AGTAGCTGTAATGGAGAAGGAGGTTGCTGCCATGCGTGTAGAGAAAGAACATGAGAATAGGGCAAAGCGGTTTAGTAATTCGAAAGGGCCTGTAAGTGCT ACTCAGATGCTTCCTGGGAGAAATGTATCACGTAGCGGGTTAACACGCAGCACTCAATGA
AA sequence Show only first row Show all	>Potri.008G135100.2 pacid=42806027 polypeptide=Potri.008G135100.2.p locus=Potri.008G135100 ID=Potri.008G135100.2.v4.1 annot-version=v4.1 MAGVYGEGTAVLEVNGGGTATTPTPLTVSGSFKEGPKSSSRRRASVRPSFDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRFSERL REKAVEELTDELSKVDEKLKLMESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRL TKSKEAALIEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKT LDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAITERTAKSEAQLKEKYQLRLKVLEESLRGSSSNNRSTPEGRGISN GPSRRQSLGGADNISKLTSNGFLSKRTQSRSLSSSTSSVLKHAKGTSKSFDGGTRSLDRSRKLLLNGAGQNHSFNQPCDGTKDTETPSPWKGNSDEKPNE FPLADTEDSVPGILYELLQKQVVALRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAVMEKEVAAMRVEKEHENRAKRFSNSKGPVSA TQMLPGRNVSRSGLTRSTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.008G135100 [exp]	0	1
AT1G68060		ATMAP70-1	microtubule-associated protein...		Potri.010G106100 [exp]	1.00	0.9478
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.008G167800 [exp]	2.00	0.9048
AT4G17486			PPPDE putative thiol peptidase...		Potri.006G154400 [exp]	3.46	0.9324
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	4.89	0.9099	ALPHA.13
AT4G30900			DNAse I-like superfamily prote...		Potri.006G184300 [exp]	4.89	0.8913
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G097500 [exp]	8.24	0.8878
AT3G28430			unknown protein		Potri.006G204600 [exp]	13.22	0.8960
AT5G60150			unknown protein		Potri.005G131500 [exp]	13.49	0.8882
AT4G36440			unknown protein		Potri.007G019400 [exp]	14.31	0.8750
AT2G17990			unknown protein		Potri.005G115500 [exp]	14.69	0.8951

Compare expression of checked genes

Potri.008G135100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.