Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FKF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68050 967 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 775 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 712 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G51550 122 / 2e-29 Kelch repeat-containing F-box family protein (.1) AT5G58140 96 / 3e-20 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 92 / 4e-19 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT1G18610 89 / 2e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 80 / 2e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 79 / 2e-15 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT1G03445 80 / 3e-15 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105700 [exp] 1100 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.018G090800 [exp] 800 / 0 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 782 / 0 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G252200 [exp] 134 / 1e-33 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.008G006300 [exp] 127 / 3e-31 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.001G342000 [exp] 92 / 4e-19 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G170640 [exp] 91 / 6e-19 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.004G209700 [exp] 91 / 1e-18 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.012G062100 [exp] 85 / 4e-17 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019169 [exp] 942 / 0 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 907 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10030757 [exp] 877 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 877 / 0 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10015531 [exp] 774 / 0 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 767 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 764 / 0 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10020003 [exp] 605 / 0 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10034827 [exp] 112 / 2e-26 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 112 / 3e-26 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF07646 [poplar] [flax] Kelch_2 Kelch motif CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain CL0183 [poplar] [flax] PAS_Fold PF13426 [poplar] [flax] PAS_9 PAS domain
Representative CDS sequence Show only first row Show all	>Potri.008G135200.1 pacid=42807190 polypeptide=Potri.008G135200.1.p locus=Potri.008G135200 ID=Potri.008G135200.1.v4.1 annot-version=v4.1 ATGTCAAAACCTCAAGAAGAAAAGTACGAGGAAGAAGAAGAGTTGCAAAGCTCTGGTAAAAGGCTGAAATGCGCCAAATCCTTCAAAGAAAAAGGGGAGG AGGAAGAAGAAGAGGAGGAGGAGGAAGAATTGGAAAGAGAGGTTTCATTAATGGAGGACACAAGAGGAGGGTTGTTTTTCTACCCAACGAATCCCACATC TTTTGTAGTTTCGGATGCTTTAGAGCTTGATTTTCCTATCATTTATGTCAACAAGGTCTTCCAGAACTTCACTGGCTACCAAGCTCACGAGGTCCTCGGT CATAACTGTCGGTTCTTACAATACAGGGATCCTCATGCTCAAAGAAGGCATCCTTTAGTAGATCCTGATGTTGTTTCTGAAATCAGAAGATGTCTTGAGG AAGGGGTGGAGTTCCAAGGTGAACTTCTAAACTTTAGGAAGGATGGTACTCCATTGGTGAACAGGCTCAGACTTGTACCTATACATGACGATGATGGAGC TATCACACACATAATAGCTATTCAGGTATTTTCAGAAGCCAAAATAGATCTGAACCATGTATCATATCCAGTCTTCAAAGAGACTTGCAATCAGCTGTCT GATCAATCAGCTAATTATTCTCTTCCGCGTGGACAATCAACATTCACTGGGCATCCAGAAATATGTGGAATACTTCAGTTGTCTGATGAAGTATTGGCTC ATAACATTTTATCACGCTTGACGCCAAGGGATGTTGCATCCATTGCATCTGTATGCAGAAGAATCCGGCAATTAACAAAAAATGAGCATGTAAGGAAGAT GGTTTGTCAAAATGCATGGGGAAGAGAAGTCACTGGTGCATTGGAGCTGATGACTAAAAAGTTGGGCTGGGGGCGTCTGGCAAGGGAACTAACTACGCTT GAGGCTGTGCGCTGGAGGAAACTGACAGTTGGAGGAGCTGTTGAGCCTTCACGCTGCAATTTCAGTGCATGTGCAGTAGGAAATAGACTTGTATTGTTTG GAGGGGAAGGGGTAAACATGCAGCCAATGGATGACACGTTTGTTCTCAATCTGGATGCTGCAAATCCAGAGTGGCAGCGTATTAGTGTGAAATCATCCCC ACCAGGGCGCTGGGGCCACACTCTTTCTTGCCTCAATGGTTCCTGTTTGGTGGTTTTTGGAGGATGTGGTAGGCAAGGGTTGCTCAATGATGTTTTTGTC CTGGACTTGGATGCCAAACAGCCTACTTGGAAGGAAGTTTCTGGCGGAACTCCCCCTCTACCTAGATCATGGCATAGCTCTTGCACCATAGAAGGTTCTA AGCTGGTTGTCTCAGGCGGATGTACAGATGCCGGGGTACTTCTCAGTGACACCTACATGTTGGATCTCACTACAGACAAGCCGATGTGGAGAGAGATCCG AACTTCTTGGGCACCTCCATCTCGATTAGGGCATTCACTCTCAGTTTATGATCGGACAAAAATTCTTATGTTTGGTGGACTTGCCAACAGTGGACACTTA CGACTGAGATCAGGCGAGGCCTACACCATTGACTTGGAGGATGAAGAACCACAATGGAGGCAACTGGAGTGCAGTGCATTAACAGGCATTGGGAGCCAGA GTTCTGATGTCCCCCCTCCCAGACTAGATCATGTTGCTGTTAGCATGCCCTGTGGAAGGATTTTAATCTTTGGTGGTTCTATTGCTGGGCTGCACTCTCC TTCTCAGCTTTTCCTGTTGGATCCTGCTGAGGAGAAACCATCATGGAGGATTCTCAATGTTCCTGGTCAACCACCAAAGTTTGCCTGGGGTCATAGCACC TGTGTGGTTGGAGGGACCAGGGTCCTAGTATTGGGGGGCCACACTGGGGAGGAATGGATACTAAACGAATTGCATGAGTTGTGCTTAGCAAGCAGGCAAG ACTCAGAACCATGA
AA sequence Show only first row Show all	>Potri.008G135200.1 pacid=42807190 polypeptide=Potri.008G135200.1.p locus=Potri.008G135200 ID=Potri.008G135200.1.v4.1 annot-version=v4.1 MSKPQEEKYEEEEELQSSGKRLKCAKSFKEKGEEEEEEEEEEELEREVSLMEDTRGGLFFYPTNPTSFVVSDALELDFPIIYVNKVFQNFTGYQAHEVLG HNCRFLQYRDPHAQRRHPLVDPDVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLVPIHDDDGAITHIIAIQVFSEAKIDLNHVSYPVFKETCNQLS DQSANYSLPRGQSTFTGHPEICGILQLSDEVLAHNILSRLTPRDVASIASVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTL EAVRWRKLTVGGAVEPSRCNFSACAVGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWQRISVKSSPPGRWGHTLSCLNGSCLVVFGGCGRQGLLNDVFV LDLDAKQPTWKEVSGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYMLDLTTDKPMWREIRTSWAPPSRLGHSLSVYDRTKILMFGGLANSGHL RLRSGEAYTIDLEDEEPQWRQLECSALTGIGSQSSDVPPPRLDHVAVSMPCGRILIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHST CVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.008G135200 [exp]	0	1	Pt-FKF1.2
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.016G028900 [exp]	2.44	0.8931
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.010G105700 [exp]	4.89	0.8565	FKF1.1
AT5G47080		CKB1	casein kinase II beta chain 1...		Potri.001G149600 [exp]	6.63	0.8603
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.009G101400 [exp]	8.12	0.8387
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	14.14	0.8747
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	17.08	0.8836
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	20.78	0.8758
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.014G029000 [exp]	22.44	0.8062
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Potri.015G061900 [exp]	26.32	0.8406
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	29.24	0.8183	GI.1

Compare expression of checked genes

Potri.008G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.