Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74590 114 / 4e-32 ATGSTU10 glutathione S-transferase TAU 10 (.1) AT5G62480 100 / 2e-26 GST14B, ATGSTU9 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) AT1G78340 64 / 7e-13 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT2G29420 62 / 2e-12 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT1G69930 58 / 1e-10 ATGSTU11 glutathione S-transferase TAU 11 (.1) AT2G29480 57 / 1e-10 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT1G27130 57 / 3e-10 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT2G29490 56 / 5e-10 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT3G09270 55 / 1e-09 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29460 53 / 6e-09 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G196700 [exp] 144 / 1e-43 AT5G62480 229 / 9e-76 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) Potri.010G061401 [exp] 61 / 3e-12 AT3G09270 113 / 7e-32 glutathione S-transferase TAU 8 (.1) Potri.008G175100 [exp] 62 / 4e-12 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 61 / 1e-11 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.013G072400 [exp] 61 / 1e-11 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.010G032800 [exp] 60 / 2e-11 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.010G035500 [exp] 60 / 2e-11 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.008G175000 [exp] 58 / 1e-10 AT2G29420 177 / 7e-56 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 57 / 2e-10 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007897 [exp] 72 / 9e-16 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10001491 [exp] 66 / 1e-13 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10021103 [exp] 63 / 2e-12 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10016471 [exp] 62 / 5e-12 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10030805 [exp] 60 / 2e-11 AT1G10370 308 / 4e-107 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10041654 [exp] 59 / 6e-11 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10030806 [exp] 58 / 1e-10 AT1G10370 290 / 4e-100 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10036688 [exp] 56 / 5e-10 AT1G10370 281 / 1e-96 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10042468 [exp] 56 / 1e-09 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10040764 [exp] 53 / 7e-09 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G135300.2 pacid=42806455 polypeptide=Potri.008G135300.2.p locus=Potri.008G135300 ID=Potri.008G135300.2.v4.1 annot-version=v4.1 AGGCATGCCGACGAGGCCTGGGAAAATACATCAAGGCTTCGGCCTGTTGATCCTTATCAAGGAGCCAAAGTCCGCTTCTGGGTTAGTTTTATTCAACAAC AGCTATTTGAGTCCATGGGTAAGGTTATCTTGAGCGATGAAGAAGCACAAGAAAAGGCAGTAGAGGAAGTGCAGGAGAAAATGAAAGTATTGGAGGAGGG CATTAAGGAATTCTCTGCAGAGGACATTCGGACCAGTGATGGGAAAAAACTGGGATTCATGGACGTTCTGGTGAGTACAACATTTAGCACCTACAAAGCT TACGAGGGAGTCCTCGGTGTCAAAGTTCTTGAGCCAGAAAAGAATCCTCTGATATACACACGGGTGACAAATTTGCATGTGCTTCCTGTGGTGCAAGAGT TGCTTCCTCCTCACGACAAGCTAGTTGCAATTCTGCAGGGTATTAGGCAGGATGCACTCAAATCT
AA sequence Show only first row Show all	>Potri.008G135300.2 pacid=42806455 polypeptide=Potri.008G135300.2.p locus=Potri.008G135300 ID=Potri.008G135300.2.v4.1 annot-version=v4.1 RHADEAWENTSRLRPVDPYQGAKVRFWVSFIQQQLFESMGKVILSDEEAQEKAVEEVQEKMKVLEEGIKEFSAEDIRTSDGKKLGFMDVLVSTTFSTYKA YEGVLGVKVLEPEKNPLIYTRVTNLHVLPVVQELLPPHDKLVAILQGIRQDALKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74590		ATGSTU10	glutathione S-transferase TAU ...		Potri.008G135300 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	2.64	0.9415
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	5.19	0.9384
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	13.49	0.9385
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.013G009400 [exp]	14.28	0.9371	VP2.2
AT1G14900		HMGA	high mobility group A (.1)		Potri.004G087500 [exp]	32.93	0.8879	HMGA902
AT5G55740		CRR21	chlororespiratory reduction 21...		Potri.006G155400 [exp]	34.20	0.9332
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.014G118500 [exp]	37.56	0.9225
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	37.74	0.9364	SK1
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	44.42	0.9322
AT1G29700			Metallo-hydrolase/oxidoreducta...		Potri.008G117600 [exp]	45.69	0.9321

Compare expression of checked genes

Potri.008G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.