Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14820 321 / 9e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G01630 157 / 2e-47 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75170 79 / 4e-17 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 78 / 9e-17 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G08690 75 / 9e-16 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G09160 73 / 1e-14 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT2G21520 72 / 2e-14 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 71 / 6e-14 ATSFH12 SEC14-like 12 (.1) AT4G34580 71 / 6e-14 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 71 / 7e-14 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105400 [exp] 435 / 9e-157 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 317 / 4e-110 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.003G162100 [exp] 164 / 3e-50 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 164 / 9e-50 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 163 / 2e-49 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.010G105100 [exp] 149 / 7e-46 AT1G14820 113 / 3e-32 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 84 / 7e-19 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 82 / 4e-18 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G032600 [exp] 80 / 4e-17 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001584 [exp] 382 / 6e-136 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10003699 [exp] 372 / 9e-132 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 307 / 1e-106 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10021817 [exp] 181 / 5e-57 AT1G14820 164 / 3e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10022428 [exp] 166 / 7e-51 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 165 / 2e-50 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 160 / 2e-48 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 157 / 4e-47 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 81 / 2e-17 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10010804 [exp] 77 / 1e-16 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.008G135600.1 pacid=42808530 polypeptide=Potri.008G135600.1.p locus=Potri.008G135600 ID=Potri.008G135600.1.v4.1 annot-version=v4.1 ATGGACAAAACCCAACAAGTAATTGCACTGACCCAGCTGAGGAAATCAGTTGAAAAGCTTGGTTCTTCCACCGAGAAGTATGGGGACCCAACACTGGTGA GGTTCTTAATTGCAAGATCAATGGACCCAGAAAAGGCAGCAAAGATGTTTGCACAGTGGCTGCAATGGAGGGCTGCATTTGTTCCAAACGGGTCTATCCC AGATTCTGAAGTTCAGGATGAATTGAGACGAAGAAAAGTCTTTTTGCAGGGTCTGTCAAGGGATGGATACCCAGTGTTGCTCGTGAAAGCAAACAAGCAC TTTCCCTCGAAGGATCAACTCCAATTTAAGAAGTTTGTTGTTCATCTGCTAGACAAGGCCATCGCAAGCTCATTCAAAGGAAGAGAAATAGGAAATGAAA AGTTGATTGCCATACTTGATCTGCAGCAAATTGCATATAAGAACATTGATGCGCGTGGATTGATCACCGGATTTCAACTTTTGCAGGCTTACTATCCAGA GCGTTTGGCAAAGTGCTTCATTTTAAGTATGCCATGGTTCTTTGTTAGTGTTTGGAGGATGGTTTCTCGCTTCCTCGAGAAGGCCACATTGGAAAAGGTT GTGATAGTAACCAGTGAAGAAGAAAGAGATTTTTTTGTAAAGGAAATTGGTGAAGAAGTCTTGCCAGAAGAGTATGGTGGTCGAGCAATGCTTGTAGCTC CTCAAGATGTCACAGTGCCGCCGCTGGAGGGTTGA
AA sequence Show only first row Show all	>Potri.008G135600.1 pacid=42808530 polypeptide=Potri.008G135600.1.p locus=Potri.008G135600 ID=Potri.008G135600.1.v4.1 annot-version=v4.1 MDKTQQVIALTQLRKSVEKLGSSTEKYGDPTLVRFLIARSMDPEKAAKMFAQWLQWRAAFVPNGSIPDSEVQDELRRRKVFLQGLSRDGYPVLLVKANKH FPSKDQLQFKKFVVHLLDKAIASSFKGREIGNEKLIAILDLQQIAYKNIDARGLITGFQLLQAYYPERLAKCFILSMPWFFVSVWRMVSRFLEKATLEKV VIVTSEEERDFFVKEIGEEVLPEEYGGRAMLVAPQDVTVPPLEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.008G135600 [exp]	0	1
AT1G33110			MATE efflux family protein (.1...		Potri.013G069700 [exp]	2.00	0.9455
AT4G05090			Inositol monophosphatase famil...		Potri.004G033200 [exp]	2.44	0.9397
AT2G24395			chaperone protein dnaJ-related...		Potri.006G278250 [exp]	10.48	0.9063
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	12.44	0.9245
AT1G45474		LHCA5	photosystem I light harvesting...		Potri.014G029700 [exp]	14.42	0.9306	2,Pt-LHCA5.2
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.004G036200 [exp]	20.24	0.8848
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	22.58	0.8931	FLS4,Pt-FLS.4
AT2G25080		ATGPX1	glutathione peroxidase 1 (.1)		Potri.018G017500 [exp]	23.06	0.9136
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.004G100000 [exp]	23.87	0.9164
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.016G040200 [exp]	24.81	0.9209	LYC.2

Compare expression of checked genes

Potri.008G135600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.